Variant report

Variant	rs55754532
Chromosome Location	chr5:106965313-106965314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10074258	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077695	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11242641	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12187753	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13163062	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17160246	0.87[ASN][1000 genomes]
rs17160255	0.84[ASN][1000 genomes]
rs17160261	0.87[ASN][1000 genomes]
rs17160272	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160287	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17160301	0.92[ASN][1000 genomes]
rs4090594	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62355651	0.85[ASN][1000 genomes]
rs7703820	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106954200-106967600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:106954400-106968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:106955400-106969000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:106956000-106968200	Weak transcription	A549	lung
7	chr5:106961400-106966400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106962400-106969200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:106962600-106969000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:106963200-106969200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:106963800-106966800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:106964600-106966000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:106964600-106967800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:106964600-106972400	Weak transcription	Fetal Heart	heart
15	chr5:106965200-106965600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr5:106965200-106965800	Enhancers	Esophagus	oesophagus
17	chr5:106965200-106966800	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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