Variant report

Variant	rs62355651
Chromosome Location	chr5:106950102-106950103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106947661..106949350-chr5:106949633..106952196,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10077695	0.83[ASN][1000 genomes]
rs11242641	0.94[ASN][1000 genomes]
rs12187753	0.84[ASN][1000 genomes]
rs13163062	0.94[ASN][1000 genomes]
rs17160246	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17160255	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17160261	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17160272	0.85[ASN][1000 genomes]
rs17160287	0.84[ASN][1000 genomes]
rs17160301	0.85[ASN][1000 genomes]
rs4090594	0.94[ASN][1000 genomes]
rs55754532	0.85[ASN][1000 genomes]
rs7703820	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106933400-106952600	Weak transcription	Aorta	Aorta
2	chr5:106941400-106950800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:106941600-106952000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:106942200-106950200	Weak transcription	NHDF-Ad	bronchial
5	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:106944400-106950200	Weak transcription	Fetal Lung	lung
7	chr5:106944600-106950800	Weak transcription	Fetal Heart	heart
8	chr5:106944600-106952200	Weak transcription	Fetal Brain Male	brain
9	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:106945600-106953200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:106947200-106951000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:106947200-106951000	Enhancers	A549	lung
13	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
14	chr5:106947400-106952800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:106947600-106950800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:106947800-106950800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:106947800-106952000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:106948000-106951200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:106948400-106950800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:106948400-106951000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:106948400-106951000	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr5:106948600-106950800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:106948600-106950800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:106948600-106951000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:106949200-106950800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:106949200-106951000	Weak transcription	Adipose Nuclei	Adipose
27	chr5:106949600-106950200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:106950000-106951200	Weak transcription	Placenta Amnion	Placenta Amnion

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