Variant report

Variant	rs17160255
Chromosome Location	chr5:106951357-106951358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106947661..106949350-chr5:106949633..106952196,2	MCF-7	breast:
2	chr5:106951124..106953877-chr5:106954303..106955918,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10074258	0.85[JPT][hapmap]
rs10077695	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs11242641	0.94[ASN][1000 genomes]
rs12187753	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs13163062	0.94[ASN][1000 genomes]
rs17160246	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17160261	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17160272	0.83[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs17160287	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs17160301	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs17160302	1.00[LWK][hapmap]
rs2112912	0.91[CHB][hapmap]
rs344376	1.00[YRI][hapmap]
rs4090594	0.86[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs55754532	0.84[ASN][1000 genomes]
rs62355651	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7703820	0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106933400-106952600	Weak transcription	Aorta	Aorta
2	chr5:106941600-106952000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:106944600-106952200	Weak transcription	Fetal Brain Male	brain
5	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:106945600-106953200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
8	chr5:106947400-106952800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:106947800-106952000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:106950200-106951400	Enhancers	Fetal Lung	lung
11	chr5:106950600-106954400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:106950800-106951400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:106950800-106951400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:106950800-106951400	Enhancers	Hela-S3	cervix
15	chr5:106950800-106951600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:106950800-106951600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:106950800-106951600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr5:106950800-106951600	Enhancers	Fetal Heart	heart
19	chr5:106950800-106952800	Enhancers	Brain Germinal Matrix	brain
20	chr5:106950800-106954200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:106950800-106954400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:106951000-106951400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:106951000-106951400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:106951000-106951400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:106951000-106951400	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr5:106951000-106951400	Flanking Active TSS	NHDF-Ad	bronchial
27	chr5:106951000-106951600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:106951000-106951600	Flanking Active TSS	A549	lung
29	chr5:106951000-106952400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:106951000-106956200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:106951200-106952000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr5:106951200-106952000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr5:106951200-106952200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:106951200-106954000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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