Variant report

Variant	rs17160287
Chromosome Location	chr5:106971103-106971104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10074258	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077695	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11242641	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12187753	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163062	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17160246	0.80[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17160255	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs17160261	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs17160272	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17160301	0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4090594	0.80[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55754532	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62355651	0.84[ASN][1000 genomes]
rs7703820	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs967270	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106964600-106972400	Weak transcription	Fetal Heart	heart
3	chr5:106966800-106979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:106967000-106972200	Weak transcription	Fetal Lung	lung
5	chr5:106967400-106973200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:106968400-106977600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:106968600-106971200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:106969200-106971200	Enhancers	NHDF-Ad	bronchial
9	chr5:106969200-106972000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr5:106969200-106972600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:106969400-106971400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:106969400-106978800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:106969600-106971200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:106969600-106972400	Weak transcription	Ovary	ovary
15	chr5:106969600-106972400	Weak transcription	Right Atrium	heart
16	chr5:106969600-106972800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:106969600-106988600	Weak transcription	Fetal Stomach	stomach
18	chr5:106969800-106971200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:106970200-106971200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:106970200-106972400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:106970200-106972800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:106970200-106985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:106970400-106971400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:106970400-106972200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr5:106970600-106971600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr5:106970600-106972200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr5:106970800-106971400	Flanking Active TSS	Osteobl	bone
28	chr5:106970800-106971600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:106970800-106971600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:106970800-106971600	Enhancers	A549	lung
31	chr5:106970800-106971800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr5:106970800-106972200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr5:106971000-106971600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:106971000-106971600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:106971000-106971600	Enhancers	GM12878-XiMat	blood
36	chr5:106971000-106972000	Enhancers	Adipose Nuclei	Adipose
37	chr5:106971000-106972200	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr5:106971000-106972600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:106971000-106972800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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