Variant report

Variant	rs13163062
Chromosome Location	chr5:106955451-106955452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106955302..106958029-chr5:107006290..107008024,2	MCF-7	breast:
2	chr5:106951124..106953877-chr5:106954303..106955918,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184349	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10077695	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11242641	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187753	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17160246	0.96[ASN][1000 genomes]
rs17160255	0.94[ASN][1000 genomes]
rs17160261	0.96[ASN][1000 genomes]
rs17160272	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17160287	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17160301	0.84[ASN][1000 genomes]
rs4090594	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55754532	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62355651	0.94[ASN][1000 genomes]
rs7703820	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
4	chr5:106951000-106956200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:106951400-106955600	Weak transcription	Fetal Lung	lung
6	chr5:106953000-106955600	Weak transcription	Fetal Brain Male	brain
7	chr5:106953200-106956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:106953200-106959600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:106953400-106957000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:106953600-106962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:106954200-106955800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:106954200-106956000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:106954200-106956800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:106954200-106967600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:106954400-106955600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:106954400-106955600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:106954400-106955600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:106954400-106955600	Weak transcription	A549	lung
19	chr5:106954400-106956800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:106954400-106968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:106954600-106955600	Weak transcription	NHDF-Ad	bronchial
22	chr5:106954600-106956000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr5:106954800-106959400	Weak transcription	Fetal Heart	heart
24	chr5:106955400-106956000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:106955400-106969000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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