Variant report

Variant	rs17160261
Chromosome Location	chr5:106954545-106954546
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106951124..106953877-chr5:106954303..106955918,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10074258	0.85[JPT][hapmap]
rs10077695	0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11242641	0.96[ASN][1000 genomes]
rs12187753	0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs13163062	0.96[ASN][1000 genomes]
rs17160246	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160255	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17160272	0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs17160287	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs17160301	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs2112912	0.87[CHB][hapmap]
rs344376	1.00[YRI][hapmap]
rs4090594	0.91[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs55754532	0.87[ASN][1000 genomes]
rs62355651	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7703820	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
4	chr5:106951000-106956200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:106951400-106954600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:106951400-106955600	Weak transcription	Fetal Lung	lung
7	chr5:106952000-106954800	Enhancers	Fetal Heart	heart
8	chr5:106953000-106955600	Weak transcription	Fetal Brain Male	brain
9	chr5:106953200-106956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:106953200-106959600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:106953400-106957000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:106953600-106954600	Enhancers	Hela-S3	cervix
13	chr5:106953600-106962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:106953800-106954600	Enhancers	NHDF-Ad	bronchial
15	chr5:106954200-106955800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:106954200-106956000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:106954200-106956800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:106954200-106967600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:106954400-106955400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr5:106954400-106955600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:106954400-106955600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:106954400-106955600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:106954400-106955600	Weak transcription	A549	lung
24	chr5:106954400-106956800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:106954400-106968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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