Variant report

Variant	rs12187753
Chromosome Location	chr5:106968202-106968203
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10074258	0.91[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077695	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11242641	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13163062	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13170272	0.82[CEU][hapmap]
rs17160246	0.86[ASN][1000 genomes]
rs17160255	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs17160261	0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs17160272	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17160287	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160301	0.81[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs4090594	0.85[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55754532	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62355651	0.84[ASN][1000 genomes]
rs7703820	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs967270	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106954400-106968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:106955400-106969000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:106962400-106969200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:106962600-106969000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:106963200-106969200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:106964600-106972400	Weak transcription	Fetal Heart	heart
9	chr5:106965600-106969000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:106965600-106969400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:106965800-106969000	Weak transcription	Esophagus	oesophagus
12	chr5:106966400-106968800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:106966800-106979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:106967000-106972200	Weak transcription	Fetal Lung	lung
15	chr5:106967400-106970800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:106967400-106973200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:106967600-106968400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:106967600-106968800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr5:106967600-106969000	Enhancers	NHDF-Ad	bronchial
20	chr5:106967600-106970400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:106967800-106968800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr5:106967800-106969000	Weak transcription	Left Ventricle	heart
23	chr5:106967800-106969000	Weak transcription	GM12878-XiMat	blood
24	chr5:106968000-106968400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:106968000-106969000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:106968200-106969000	Enhancers	Osteobl	bone
27	chr5:106968200-106969400	Enhancers	A549	lung
28	chr5:106968200-106969800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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