Variant report

Variant	rs17160246
Chromosome Location	chr5:106946476-106946477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106943782..106947314-chr5:107006356..107009674,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184349	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10074258	0.81[JPT][hapmap]
rs10077695	0.80[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11242641	0.96[ASN][1000 genomes]
rs12187753	0.86[ASN][1000 genomes]
rs13163062	0.96[ASN][1000 genomes]
rs17160255	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17160261	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160272	0.84[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs17160287	0.80[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17160301	0.92[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs2112912	0.82[CHB][hapmap]
rs344376	1.00[YRI][hapmap]
rs4090594	0.86[CHB][hapmap];0.84[JPT][hapmap];0.96[ASN][1000 genomes]
rs55754532	0.87[ASN][1000 genomes]
rs62355651	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7703820	0.88[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106933400-106952600	Weak transcription	Aorta	Aorta
2	chr5:106941400-106950800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:106941600-106947400	Weak transcription	NHLF	lung
4	chr5:106941600-106952000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:106942200-106946600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:106942200-106950200	Weak transcription	NHDF-Ad	bronchial
7	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:106944000-106947000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:106944200-106949600	Weak transcription	Fetal Kidney	kidney
10	chr5:106944400-106946800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:106944400-106946800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:106944400-106946800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:106944400-106948200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:106944400-106948400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:106944400-106950200	Weak transcription	Fetal Lung	lung
16	chr5:106944600-106946600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:106944600-106948600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:106944600-106950800	Weak transcription	Fetal Heart	heart
19	chr5:106944600-106952200	Weak transcription	Fetal Brain Male	brain
20	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:106945200-106948600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:106945400-106946800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:106945600-106953200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:106946400-106947000	Active TSS	A549	lung
25	chr5:106946400-106947800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr5:106946400-106947800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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