Variant report

Variant	rs10148404
Chromosome Location	chr14:70284576-70284577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70284000..70285819-chr14:70633377..70635928,2	K562	blood:
2	chr14:70284132..70286001-chr14:70493432..70495092,2	MCF-7	breast:
3	chr14:70284087..70286942-chr14:70495674..70497567,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100678	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10130926	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10136397	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136529	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10146537	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11620808	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621916	0.95[EUR][1000 genomes]
rs11622580	0.86[EUR][1000 genomes]
rs11622925	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11623262	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11624532	0.95[EUR][1000 genomes]
rs11625731	0.86[EUR][1000 genomes]
rs11625932	0.89[EUR][1000 genomes]
rs11626145	0.84[EUR][1000 genomes]
rs11627012	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11627089	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628423	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11628546	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11628665	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12431573	0.87[ASN][1000 genomes]
rs13313365	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13313366	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13313388	0.96[ASN][1000 genomes]
rs14411	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328	0.87[ASN][1000 genomes]
rs1953399	0.89[EUR][1000 genomes]
rs28404963	0.86[EUR][1000 genomes]
rs28437671	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437822	0.92[EUR][1000 genomes]
rs28480224	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490548	0.82[ASN][1000 genomes]
rs2877595	0.86[EUR][1000 genomes]
rs2877598	0.95[ASN][1000 genomes]
rs28785205	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28847646	0.85[EUR][1000 genomes]
rs3809399	0.89[EUR][1000 genomes]
rs4646285	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4646286	0.83[ASN][1000 genomes]
rs4899311	0.88[EUR][1000 genomes]
rs4899313	0.89[EUR][1000 genomes]
rs4902752	0.88[EUR][1000 genomes]
rs4902753	0.88[EUR][1000 genomes]
rs4902756	0.84[ASN][1000 genomes]
rs4902757	0.91[ASN][1000 genomes]
rs55724465	0.92[EUR][1000 genomes]
rs55987626	0.85[EUR][1000 genomes]
rs56074637	0.89[EUR][1000 genomes]
rs56140822	0.86[EUR][1000 genomes]
rs56177148	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57492222	0.89[EUR][1000 genomes]
rs58582364	0.95[EUR][1000 genomes]
rs59066042	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59172911	0.86[EUR][1000 genomes]
rs61356864	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6573905	0.86[EUR][1000 genomes]
rs6573906	0.86[EUR][1000 genomes]
rs6573909	0.90[ASN][1000 genomes]
rs7153985	0.85[EUR][1000 genomes]
rs7154439	0.83[ASN][1000 genomes]
rs7160953	0.86[EUR][1000 genomes]
rs7161476	0.86[EUR][1000 genomes]
rs72725718	0.86[EUR][1000 genomes]
rs72725724	0.89[EUR][1000 genomes]
rs72725740	0.92[EUR][1000 genomes]
rs72725743	0.95[EUR][1000 genomes]
rs72725745	0.95[EUR][1000 genomes]
rs72725773	0.84[EUR][1000 genomes]
rs72725776	0.87[EUR][1000 genomes]
rs72725780	0.87[EUR][1000 genomes]
rs8005609	0.97[ASN][1000 genomes]
rs8010836	0.86[EUR][1000 genomes]
rs8021735	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70280000-70285200	Weak transcription	Hela-S3	cervix
2	chr14:70281200-70285200	Weak transcription	HepG2	liver
3	chr14:70282400-70287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:70283600-70286000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70284200-70288200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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