Variant report

Variant	rs6573906
Chromosome Location	chr14:70209912-70209913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70209618..70212436-chr14:70221216..70223040,2	MCF-7	breast:
2	chr14:70202452..70213184-chr14:70231962..70238183,25	MCF-7	breast:
3	chr14:70200097..70202491-chr14:70206631..70210383,3	K562	blood:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10130926	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10136397	0.86[EUR][1000 genomes]
rs10142027	0.87[ASN][1000 genomes]
rs10142031	0.87[ASN][1000 genomes]
rs10142686	0.88[ASN][1000 genomes]
rs10143223	0.90[ASN][1000 genomes]
rs10146537	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10148404	0.86[EUR][1000 genomes]
rs10151895	0.93[ASN][1000 genomes]
rs10459536	0.94[ASN][1000 genomes]
rs11620808	0.86[EUR][1000 genomes]
rs11621916	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11622580	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622925	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11623262	0.89[EUR][1000 genomes]
rs11624523	0.94[ASN][1000 genomes]
rs11624532	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11625731	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11625932	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11627012	0.89[EUR][1000 genomes]
rs11627089	0.86[EUR][1000 genomes]
rs11628423	0.89[EUR][1000 genomes]
rs11628546	0.89[EUR][1000 genomes]
rs11628665	0.86[EUR][1000 genomes]
rs12431573	0.81[ASN][1000 genomes]
rs13313365	0.86[EUR][1000 genomes]
rs13313366	0.86[EUR][1000 genomes]
rs14411	0.86[EUR][1000 genomes]
rs17328	0.81[ASN][1000 genomes]
rs1953399	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1953400	0.95[ASN][1000 genomes]
rs2148503	0.94[ASN][1000 genomes]
rs2148505	0.91[ASN][1000 genomes]
rs2332167	0.94[ASN][1000 genomes]
rs28404963	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437671	0.86[EUR][1000 genomes]
rs28437822	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28480224	0.82[EUR][1000 genomes]
rs2877595	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28785205	0.89[EUR][1000 genomes]
rs28847646	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3104	0.92[ASN][1000 genomes]
rs3784152	0.91[ASN][1000 genomes]
rs3784153	0.91[ASN][1000 genomes]
rs3809399	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646285	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646286	0.84[ASN][1000 genomes]
rs4646297	0.91[ASN][1000 genomes]
rs4899311	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4899313	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902752	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902753	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902755	0.94[ASN][1000 genomes]
rs55724465	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55987626	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56074637	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56140822	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56177148	0.86[EUR][1000 genomes]
rs57492222	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58582364	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59066042	0.86[EUR][1000 genomes]
rs59172911	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60442313	0.94[ASN][1000 genomes]
rs61356864	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573907	0.95[ASN][1000 genomes]
rs6573908	0.89[ASN][1000 genomes]
rs7142868	0.95[ASN][1000 genomes]
rs7153496	0.94[ASN][1000 genomes]
rs7153985	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7154439	0.84[ASN][1000 genomes]
rs7160953	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161476	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725718	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725724	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72725740	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72725743	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72725745	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010836	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011311	0.90[ASN][1000 genomes]
rs8013598	0.90[ASN][1000 genomes]
rs8014236	0.90[ASN][1000 genomes]
rs8021735	0.81[ASN][1000 genomes]
rs9944036	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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