Variant report

Variant	rs1953400
Chromosome Location	chr14:70223333-70223334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70221981..70224233-chr14:70227163..70228798,2	K562	blood:
2	chr14:70219020..70221233-chr14:70223129..70224904,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10130926	0.83[ASN][1000 genomes]
rs10136529	0.91[EUR][1000 genomes]
rs10142027	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10142031	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10142686	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143223	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10146537	0.81[ASN][1000 genomes]
rs10151895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10459536	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11621916	0.86[ASN][1000 genomes]
rs11622580	0.95[ASN][1000 genomes]
rs11622925	0.88[ASN][1000 genomes]
rs11624523	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11624532	0.89[ASN][1000 genomes]
rs11625731	0.95[ASN][1000 genomes]
rs11625932	0.96[ASN][1000 genomes]
rs11629054	0.81[ASN][1000 genomes]
rs12431573	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13313388	0.93[EUR][1000 genomes]
rs17328	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1953399	0.96[ASN][1000 genomes]
rs2148503	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2148505	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2332167	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28404963	0.95[ASN][1000 genomes]
rs28437822	0.95[ASN][1000 genomes]
rs28490548	0.91[EUR][1000 genomes]
rs2877595	0.95[ASN][1000 genomes]
rs2877598	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28847646	0.91[ASN][1000 genomes]
rs3104	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784152	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784153	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3809399	0.88[ASN][1000 genomes]
rs4646285	0.88[ASN][1000 genomes]
rs4646286	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4646297	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899311	0.94[ASN][1000 genomes]
rs4899313	0.94[ASN][1000 genomes]
rs4902752	0.95[ASN][1000 genomes]
rs4902753	0.95[ASN][1000 genomes]
rs4902755	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902756	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902757	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55724465	0.95[ASN][1000 genomes]
rs55987626	0.90[ASN][1000 genomes]
rs56074637	0.90[ASN][1000 genomes]
rs56140822	0.84[ASN][1000 genomes]
rs57492222	0.96[ASN][1000 genomes]
rs58582364	0.95[ASN][1000 genomes]
rs59172911	0.95[ASN][1000 genomes]
rs60442313	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61356864	0.85[ASN][1000 genomes]
rs6573905	0.95[ASN][1000 genomes]
rs6573906	0.95[ASN][1000 genomes]
rs6573907	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573908	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573909	0.95[EUR][1000 genomes]
rs7142868	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7152290	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7153496	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7153985	0.95[ASN][1000 genomes]
rs7154439	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7160953	0.95[ASN][1000 genomes]
rs7161476	0.95[ASN][1000 genomes]
rs72725718	0.95[ASN][1000 genomes]
rs72725724	0.89[ASN][1000 genomes]
rs72725740	0.95[ASN][1000 genomes]
rs72725743	0.95[ASN][1000 genomes]
rs72725745	0.95[ASN][1000 genomes]
rs8005609	0.93[EUR][1000 genomes]
rs8010836	0.95[ASN][1000 genomes]
rs8011311	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8013598	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8014236	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8021735	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9944036	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70218800-70223400	Enhancers	HepG2	liver
2	chr14:70220800-70223600	Enhancers	Fetal Intestine Large	intestine
3	chr14:70221000-70223600	Enhancers	Fetal Intestine Small	intestine
4	chr14:70221000-70227200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr14:70221200-70223400	Enhancers	K562	blood
6	chr14:70222000-70223400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr14:70222000-70223400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:70222000-70223400	Enhancers	Duodenum Mucosa	Duodenum
9	chr14:70222000-70223400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:70222400-70233000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr14:70222600-70227400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:70223000-70223400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr14:70223000-70228800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:70223200-70228400	Weak transcription	Primary T cells from cord blood	blood
15	chr14:70223200-70232400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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