Variant report

Variant	rs7154439
Chromosome Location	chr14:70265828-70265829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:70265697-70265878	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:70232739..70236319-chr14:70264002..70267714,4	MCF-7	breast:
2	chr14:70261200..70263802-chr14:70264379..70267059,2	MCF-7	breast:
3	chr14:70264666..70266507-chr14:70268472..70271032,2	MCF-7	breast:
4	chr14:70233030..70235263-chr14:70265408..70267829,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRSF5-1	chr14:70265065-70266679	NONHSAT037545

No data

Variant related genes	Relation type
SLC10A1	TF binding region
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10130926	0.90[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10136397	0.83[ASN][1000 genomes]
rs10136529	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10142027	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10142031	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10142686	0.92[EUR][1000 genomes]
rs10143223	0.84[CEU][hapmap];0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs10146537	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10148404	0.83[ASN][1000 genomes]
rs10151895	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10459536	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11620808	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11622580	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs11622925	0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11624523	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11624532	0.81[CHB][hapmap];0.92[CHD][hapmap];0.80[ASN][1000 genomes]
rs11625731	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs11625932	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs11627012	0.83[ASN][1000 genomes]
rs11627089	0.83[ASN][1000 genomes]
rs11628423	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11628546	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11628665	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11629054	0.84[CEU][hapmap];0.88[CHD][hapmap];0.83[MEX][hapmap]
rs12431573	0.96[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13313365	0.83[ASN][1000 genomes]
rs13313366	0.83[ASN][1000 genomes]
rs13313388	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs14411	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17328	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1953399	0.85[ASN][1000 genomes]
rs1953400	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2148503	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2148505	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2332167	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28404963	0.84[ASN][1000 genomes]
rs28437671	0.83[ASN][1000 genomes]
rs28437822	0.86[ASN][1000 genomes]
rs28480224	0.83[ASN][1000 genomes]
rs28490548	0.95[EUR][1000 genomes]
rs2877595	0.84[ASN][1000 genomes]
rs2877598	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28785205	0.83[ASN][1000 genomes]
rs28847646	0.83[ASN][1000 genomes]
rs3104	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784152	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3784153	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3809399	0.81[CHB][hapmap];0.96[CHD][hapmap];0.81[ASN][1000 genomes]
rs4646285	0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4646286	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4646297	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4899311	0.83[ASN][1000 genomes]
rs4899313	0.81[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4902752	0.81[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs4902753	0.84[ASN][1000 genomes]
rs4902755	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902756	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902757	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55724465	0.86[ASN][1000 genomes]
rs55987626	0.82[ASN][1000 genomes]
rs56177148	0.83[ASN][1000 genomes]
rs57492222	0.85[ASN][1000 genomes]
rs58582364	0.86[ASN][1000 genomes]
rs59066042	0.83[ASN][1000 genomes]
rs59172911	0.84[ASN][1000 genomes]
rs60442313	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61356864	0.96[ASN][1000 genomes]
rs6573905	0.84[ASN][1000 genomes]
rs6573906	0.84[ASN][1000 genomes]
rs6573907	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6573908	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573909	0.96[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7142868	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7152290	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7153496	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7153985	0.86[ASN][1000 genomes]
rs7160953	0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7161476	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs72725718	0.84[ASN][1000 genomes]
rs72725724	0.80[ASN][1000 genomes]
rs72725740	0.86[ASN][1000 genomes]
rs72725743	0.86[ASN][1000 genomes]
rs72725745	0.86[ASN][1000 genomes]
rs8005609	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8010836	0.90[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs8011311	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8013598	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8014236	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8021735	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9944036	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7154439	MPP5	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70248200-70271600	Weak transcription	Psoas Muscle	Psoas
2	chr14:70254800-70275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:70264600-70266000	Enhancers	HepG2	liver
4	chr14:70265000-70266600	Enhancers	Liver	Liver
5	chr14:70265400-70268800	Weak transcription	Placenta	Placenta
6	chr14:70265600-70266000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:70265600-70266400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:70265800-70266200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr14:70265800-70266400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:70265800-70266400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr14:70265800-70266600	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links