Variant report

Variant	rs3784153
Chromosome Location	chr14:70247782-70247783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70196914..70198429-chr14:70246802..70249135,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10130926	0.80[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10136529	0.92[EUR][1000 genomes]
rs10142027	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10142031	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10142686	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10143223	0.81[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10146537	0.84[JPT][hapmap]
rs10151895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10459536	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11620808	0.84[JPT][hapmap]
rs11621916	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs11622580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11622925	0.90[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs11624523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11624532	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs11625731	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11625932	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11628546	0.84[JPT][hapmap]
rs11628665	0.90[JPT][hapmap]
rs11629054	0.87[CEU][hapmap];0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs12431573	0.96[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13313388	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs14411	0.84[JPT][hapmap]
rs17328	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1953399	0.93[ASN][1000 genomes]
rs1953400	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148503	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2148505	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28404963	0.91[ASN][1000 genomes]
rs28437822	0.94[ASN][1000 genomes]
rs28490548	0.93[EUR][1000 genomes]
rs2877595	0.91[ASN][1000 genomes]
rs2877598	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28847646	0.88[ASN][1000 genomes]
rs3104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784152	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809399	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs4646285	0.90[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs4646286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4646297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899311	0.90[ASN][1000 genomes]
rs4899313	0.91[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs4902752	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4902753	0.91[ASN][1000 genomes]
rs4902755	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902756	1.00[CEU][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902757	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55724465	0.94[ASN][1000 genomes]
rs55987626	0.86[ASN][1000 genomes]
rs56074637	0.86[ASN][1000 genomes]
rs56140822	0.80[ASN][1000 genomes]
rs57492222	0.93[ASN][1000 genomes]
rs58582364	0.94[ASN][1000 genomes]
rs59172911	0.91[ASN][1000 genomes]
rs60442313	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61356864	0.84[ASN][1000 genomes]
rs6573905	0.91[ASN][1000 genomes]
rs6573906	0.91[ASN][1000 genomes]
rs6573907	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6573909	0.96[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7142868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152290	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7153496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153985	0.91[ASN][1000 genomes]
rs7154439	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7160953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7161476	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs72725718	0.91[ASN][1000 genomes]
rs72725724	0.85[ASN][1000 genomes]
rs72725740	0.94[ASN][1000 genomes]
rs72725743	0.94[ASN][1000 genomes]
rs72725745	0.94[ASN][1000 genomes]
rs8005609	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8010836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8011311	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8013598	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8014236	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8021735	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9944036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70235400-70248200	Strong transcription	Fetal Muscle Trunk	muscle
2	chr14:70235800-70248800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr14:70235800-70249200	Strong transcription	HSMM	muscle
4	chr14:70236000-70248800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:70236400-70248800	Strong transcription	Primary B cells from cord blood	blood
6	chr14:70236600-70248200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:70236600-70248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:70236600-70248200	Strong transcription	HMEC	breast
9	chr14:70236600-70248400	Strong transcription	Fetal Lung	lung
10	chr14:70236600-70249400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:70236800-70247800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:70236800-70248000	Weak transcription	Right Atrium	heart
13	chr14:70236800-70248200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:70236800-70248400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:70236800-70248600	Strong transcription	Fetal Brain Female	brain
16	chr14:70236800-70248800	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr14:70236800-70249000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:70236800-70249000	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr14:70237000-70253200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:70237200-70248400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:70237400-70248800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:70237600-70248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:70237600-70248800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr14:70237600-70248800	Strong transcription	Brain Substantia Nigra	brain
25	chr14:70237600-70248800	Strong transcription	NHLF	lung
26	chr14:70237600-70249000	Strong transcription	A549	lung
27	chr14:70237600-70253400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:70237800-70248400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:70237800-70248800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:70237800-70249000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr14:70238200-70248600	Strong transcription	Fetal Intestine Large	intestine
32	chr14:70238200-70249000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr14:70238200-70263600	Weak transcription	Stomach Mucosa	stomach
34	chr14:70238400-70254600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr14:70239600-70249000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:70240400-70248400	Strong transcription	Thymus	Thymus
37	chr14:70241000-70256200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:70241200-70251600	Weak transcription	Colonic Mucosa	Colon
39	chr14:70242800-70247800	Strong transcription	Rectal Smooth Muscle	rectum
40	chr14:70243200-70249200	Strong transcription	Fetal Thymus	thymus
41	chr14:70243600-70249200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:70244000-70248400	Strong transcription	Brain Hippocampus Middle	brain
43	chr14:70244000-70249000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr14:70244200-70248800	Strong transcription	Brain Cingulate Gyrus	brain
45	chr14:70244200-70253400	Strong transcription	Brain Anterior Caudate	brain
46	chr14:70244400-70248200	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:70244800-70248400	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr14:70244800-70248800	Strong transcription	Brain Germinal Matrix	brain
49	chr14:70244800-70250000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr14:70245000-70249200	Strong transcription	Primary T cells from cord blood	blood

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