Variant report

Variant	rs8011311
Chromosome Location	chr14:70259063-70259064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:70253162..70255324-chr14:70257744..70259323,3	MCF-7	breast:
2	chr14:70251883..70253738-chr14:70258774..70260616,2	MCF-7	breast:
3	chr14:70232807..70236599-chr14:70258416..70262612,5	K562	blood:
4	chr14:70255116..70258123-chr14:70258993..70261547,3	MCF-7	breast:
5	chr14:70258156..70261059-chr14:70276205..70278349,3	MCF-7	breast:
6	chr14:70256053..70260532-chr14:70262119..70264401,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf162-5	chr14:70258997-70263055	ucscGeneNc_uc001xmj_1

No data

Variant related genes	Relation type
ENSG00000100652	Chromatin interaction
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10130926	0.87[ASN][1000 genomes]
rs10136529	0.95[EUR][1000 genomes]
rs10142027	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10142031	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10142686	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10143223	0.90[ASN][1000 genomes]
rs10146537	0.85[ASN][1000 genomes]
rs10151895	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10459536	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11621916	0.83[ASN][1000 genomes]
rs11622580	0.90[ASN][1000 genomes]
rs11622925	0.92[ASN][1000 genomes]
rs11624523	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11624532	0.86[ASN][1000 genomes]
rs11625731	0.90[ASN][1000 genomes]
rs11625932	0.91[ASN][1000 genomes]
rs12431573	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13313388	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17328	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1953399	0.91[ASN][1000 genomes]
rs1953400	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2148503	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148505	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2332167	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28404963	0.90[ASN][1000 genomes]
rs28437822	0.92[ASN][1000 genomes]
rs28490548	0.95[EUR][1000 genomes]
rs2877595	0.90[ASN][1000 genomes]
rs2877598	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28847646	0.89[ASN][1000 genomes]
rs3104	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784152	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3784153	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3809399	0.87[ASN][1000 genomes]
rs4646285	0.92[ASN][1000 genomes]
rs4646286	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4646297	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899311	0.89[ASN][1000 genomes]
rs4899313	0.93[ASN][1000 genomes]
rs4902752	0.90[ASN][1000 genomes]
rs4902753	0.90[ASN][1000 genomes]
rs4902755	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902756	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902757	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55724465	0.92[ASN][1000 genomes]
rs55987626	0.87[ASN][1000 genomes]
rs56074637	0.85[ASN][1000 genomes]
rs56140822	0.81[ASN][1000 genomes]
rs57492222	0.91[ASN][1000 genomes]
rs58582364	0.92[ASN][1000 genomes]
rs59172911	0.90[ASN][1000 genomes]
rs60442313	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61356864	0.90[ASN][1000 genomes]
rs6573905	0.90[ASN][1000 genomes]
rs6573906	0.90[ASN][1000 genomes]
rs6573907	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573908	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6573909	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7142868	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7152290	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7153496	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7153985	0.92[ASN][1000 genomes]
rs7154439	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7160953	0.90[ASN][1000 genomes]
rs7161476	0.90[ASN][1000 genomes]
rs72725718	0.90[ASN][1000 genomes]
rs72725724	0.86[ASN][1000 genomes]
rs72725740	0.92[ASN][1000 genomes]
rs72725743	0.92[ASN][1000 genomes]
rs72725745	0.92[ASN][1000 genomes]
rs8005609	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8010836	0.90[ASN][1000 genomes]
rs8013598	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8014236	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021735	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9944036	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70238200-70263600	Weak transcription	Stomach Mucosa	stomach
2	chr14:70246200-70259800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:70246400-70261800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:70246400-70264000	Weak transcription	Fetal Intestine Small	intestine
5	chr14:70247000-70264600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:70248200-70263000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:70248200-70271600	Weak transcription	Psoas Muscle	Psoas
8	chr14:70248400-70264400	Weak transcription	Esophagus	oesophagus
9	chr14:70248600-70263600	Weak transcription	Right Ventricle	heart
10	chr14:70248800-70264000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:70249000-70264000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr14:70251800-70264200	Weak transcription	Colonic Mucosa	Colon
13	chr14:70253400-70259800	Weak transcription	Pancreas	Pancrea
14	chr14:70253400-70263400	Weak transcription	Lung	lung
15	chr14:70253400-70263600	Weak transcription	Gastric	stomach
16	chr14:70253400-70263800	Weak transcription	Brain Anterior Caudate	brain
17	chr14:70253400-70264200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:70253600-70263400	Weak transcription	Placenta	Placenta
19	chr14:70253600-70263400	Weak transcription	Left Ventricle	heart
20	chr14:70253600-70263800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:70253600-70263800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr14:70253800-70264000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr14:70254200-70263600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr14:70254200-70265800	Weak transcription	Spleen	Spleen
25	chr14:70254800-70275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:70258400-70262200	Enhancers	HepG2	liver
27	chr14:70259000-70259600	Flanking Active TSS	Liver	Liver

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