Variant report

Variant	rs10176949
Chromosome Location	chr2:37487723-37487724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37486999..37491157-chr2:37494189..37497497,3	MCF-7	breast:
2	chr2:37477058..37480479-chr2:37486179..37488698,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10177176	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10184179	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10190959	0.82[EUR][1000 genomes]
rs10209937	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1056021	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11124569	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11124574	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1158218	0.82[EUR][1000 genomes]
rs1158219	0.82[EUR][1000 genomes]
rs11679617	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11680401	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11682607	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11683872	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11685805	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11689794	0.81[EUR][1000 genomes]
rs11893943	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12616151	0.81[EUR][1000 genomes]
rs12618410	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13015451	0.81[EUR][1000 genomes]
rs13420463	0.82[ASN][1000 genomes]
rs17020386	0.90[ASN][1000 genomes]
rs2041836	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268990	0.82[EUR][1000 genomes]
rs2300893	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2888434	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3213745	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34819784	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3755195	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3770759	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4998429	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6743782	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72792829	0.83[ASN][1000 genomes]
rs74177070	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7570547	0.81[EUR][1000 genomes]
rs7584565	0.81[EUR][1000 genomes]
rs7589296	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9309004	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10176949	CEBPZ	cis	Esophagus Mucosa	GTEx
rs10176949	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs10176949	PRKD3	cis	lung	GTEx
rs10176949	CEBPZ	cis	Nerve Tibial	GTEx
rs10176949	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
2	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
4	chr2:37460400-37492200	Weak transcription	Fetal Heart	heart
5	chr2:37460400-37498600	Weak transcription	Gastric	stomach
6	chr2:37460600-37488000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:37460600-37493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:37460600-37498600	Weak transcription	Spleen	Spleen
9	chr2:37461000-37488200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:37461000-37489800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:37462000-37488000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:37463200-37488000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr2:37463400-37488400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:37463400-37509600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:37463600-37489600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:37463800-37488200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:37464000-37488400	Strong transcription	Primary B cells from peripheral blood	blood
19	chr2:37464400-37489600	Strong transcription	Liver	Liver
20	chr2:37465000-37489600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
22	chr2:37468200-37487800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:37468200-37488200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr2:37468400-37488400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr2:37468400-37492400	Strong transcription	NH-A	brain
26	chr2:37470400-37488000	Strong transcription	Dnd41	blood
27	chr2:37470400-37498600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:37470400-37521600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:37470600-37493400	Weak transcription	Fetal Intestine Small	intestine
30	chr2:37470800-37521400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:37471000-37490000	Strong transcription	Fetal Thymus	thymus
32	chr2:37471400-37488000	Strong transcription	Placenta	Placenta
33	chr2:37471600-37490200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr2:37475600-37491000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:37476800-37501400	Weak transcription	Esophagus	oesophagus
36	chr2:37477200-37488200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:37477400-37488200	Strong transcription	Osteobl	bone
38	chr2:37477400-37502200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr2:37478400-37488200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr2:37478600-37489400	Strong transcription	Primary T cells from cord blood	blood
41	chr2:37478800-37487800	Strong transcription	Fetal Muscle Leg	muscle
42	chr2:37478800-37489400	Strong transcription	Left Ventricle	heart
43	chr2:37478800-37491200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:37479400-37520600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr2:37479800-37501600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr2:37480600-37505000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr2:37481600-37487800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr2:37481600-37500800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr2:37482000-37489600	Weak transcription	GM12878-XiMat	blood
50	chr2:37482600-37497800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links