Variant report

Variant	rs34819784
Chromosome Location	chr2:37491032-37491033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37486999..37491157-chr2:37494189..37497497,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10166051	0.83[AFR][1000 genomes]
rs10176949	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10177176	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10184179	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10190959	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1056021	0.85[ASN][1000 genomes]
rs11124569	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11124574	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1158218	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1158219	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11679617	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11680401	0.84[ASN][1000 genomes]
rs11682607	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11683872	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11685805	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11689794	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11893943	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12616151	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12618410	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12712532	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13015451	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13030789	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13420463	0.81[ASN][1000 genomes]
rs17020386	0.92[ASN][1000 genomes]
rs2041836	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2300893	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2372993	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2888434	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3213745	0.81[AMR][1000 genomes]
rs3755195	0.81[AMR][1000 genomes]
rs3770759	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4998429	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6743782	0.86[ASN][1000 genomes]
rs72792829	0.84[ASN][1000 genomes]
rs74177070	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7563610	0.81[EUR][1000 genomes]
rs7568510	0.84[AFR][1000 genomes]
rs7570547	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7584565	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7589296	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9309004	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs34819784	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs34819784	CEBPZ	cis	Nerve Tibial	GTEx
rs34819784	CEBPZ	cis	Esophagus Mucosa	GTEx
rs34819784	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
2	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
4	chr2:37460400-37492200	Weak transcription	Fetal Heart	heart
5	chr2:37460400-37498600	Weak transcription	Gastric	stomach
6	chr2:37460600-37493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:37460600-37498600	Weak transcription	Spleen	Spleen
8	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:37463400-37509600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
11	chr2:37468400-37492400	Strong transcription	NH-A	brain
12	chr2:37470400-37498600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:37470400-37521600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:37470600-37493400	Weak transcription	Fetal Intestine Small	intestine
15	chr2:37470800-37521400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:37476800-37501400	Weak transcription	Esophagus	oesophagus
17	chr2:37477400-37502200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:37478800-37491200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:37479400-37520600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:37479800-37501600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:37480600-37505000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr2:37481600-37500800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:37482600-37497800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr2:37482600-37501800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:37482800-37498600	Weak transcription	Lung	lung
26	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr2:37483200-37492400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr2:37483400-37492200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr2:37483400-37498600	Weak transcription	HSMMtube	muscle
30	chr2:37483600-37498600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:37484000-37495400	Weak transcription	Thymus	Thymus
32	chr2:37484200-37501600	Weak transcription	K562	blood
33	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr2:37484400-37511600	Weak transcription	Fetal Brain Male	brain
35	chr2:37484600-37498600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr2:37484600-37498600	Weak transcription	NHEK	skin
37	chr2:37484600-37500000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:37484600-37500400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr2:37484600-37501400	Weak transcription	Colonic Mucosa	Colon
40	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
41	chr2:37484800-37498600	Weak transcription	Aorta	Aorta
42	chr2:37485400-37494600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr2:37485800-37493400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:37486200-37492200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr2:37486200-37492200	Weak transcription	Fetal Lung	lung
46	chr2:37486200-37492200	Weak transcription	Hela-S3	cervix
47	chr2:37486200-37492200	Weak transcription	NHLF	lung
48	chr2:37486200-37501600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr2:37486400-37495400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr2:37486400-37501200	Weak transcription	Psoas Muscle	Psoas

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