Variant report

Variant	rs10188834
Chromosome Location	chr2:54164373-54164374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr2:54164273-54164738	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:54157567..54166967-chr2:54194910..54201681,12	MCF-7	breast:
2	chr2:54156677..54159064-chr2:54162105..54166015,3	K562	blood:
3	chr2:54159943..54161728-chr2:54163948..54166249,2	K562	blood:
4	chr2:54151314..54153271-chr2:54161912..54164849,2	K562	blood:

Variant related genes	Relation type
PSME4	TF binding region
ENSG00000068878	Chromatin interaction
ENSG00000170634	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10180492	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190353	0.83[AMR][1000 genomes]
rs10199444	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199995	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10208649	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1049894	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11125517	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884857	0.83[AMR][1000 genomes]
rs11886024	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887593	0.83[AMR][1000 genomes]
rs11889527	0.83[AMR][1000 genomes]
rs11890472	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891000	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892759	1.00[ASN][1000 genomes]
rs11894028	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904365	0.83[AMR][1000 genomes]
rs13387291	1.00[ASN][1000 genomes]
rs13389673	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395751	0.83[AMR][1000 genomes]
rs13401491	0.83[AMR][1000 genomes]
rs13401719	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13402778	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417051	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432387	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404994	1.00[ASN][1000 genomes]
rs17045242	1.00[ASN][1000 genomes]
rs2112120	0.83[AMR][1000 genomes]
rs2161083	0.83[AMR][1000 genomes]
rs2177791	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177792	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391754	1.00[ASN][1000 genomes]
rs28571698	0.83[AMR][1000 genomes]
rs28699646	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3930909	1.00[ASN][1000 genomes]
rs41536750	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58920915	0.83[AMR][1000 genomes]
rs59172147	0.86[EUR][1000 genomes]
rs60769690	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60776154	0.83[AMR][1000 genomes]
rs6545367	1.00[ASN][1000 genomes]
rs6545369	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545372	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6712561	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715161	0.83[AMR][1000 genomes]
rs6719990	0.83[AMR][1000 genomes]
rs6723722	1.00[ASN][1000 genomes]
rs6730494	0.83[AMR][1000 genomes]
rs6731217	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731911	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740063	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745729	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748686	0.83[AMR][1000 genomes]
rs6751340	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756424	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759437	1.00[ASN][1000 genomes]
rs6761648	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902931	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904915	0.83[AMR][1000 genomes]
rs72906711	0.83[AMR][1000 genomes]
rs72906714	0.83[AMR][1000 genomes]
rs73937421	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559651	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7560575	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565152	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567225	1.00[ASN][1000 genomes]
rs7588319	0.83[AMR][1000 genomes]
rs7594327	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599335	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608085	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608989	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309251	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
4	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:54126200-54167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:54135600-54172200	Weak transcription	Fetal Heart	heart
9	chr2:54139200-54176600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:54139200-54177000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:54139400-54167200	Strong transcription	Liver	Liver
12	chr2:54139400-54167800	Strong transcription	Dnd41	blood
13	chr2:54139400-54176200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:54139600-54170800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:54139600-54177000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:54141200-54166200	Strong transcription	Primary B cells from cord blood	blood
17	chr2:54141200-54167200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr2:54141400-54166600	Strong transcription	NH-A	brain
19	chr2:54141400-54167400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:54141400-54167600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:54141400-54170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:54141600-54167000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:54141600-54167000	Strong transcription	Osteobl	bone
24	chr2:54142000-54165000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr2:54142000-54165600	Strong transcription	Adipose Nuclei	Adipose
26	chr2:54142000-54167200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr2:54142000-54167200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr2:54142200-54167200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr2:54142200-54167800	Strong transcription	HSMM	muscle
30	chr2:54142400-54166200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:54142400-54166600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:54143000-54166200	Strong transcription	HUVEC	blood vessel
33	chr2:54143000-54177600	Strong transcription	HepG2	liver
34	chr2:54143200-54167400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr2:54143400-54165400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:54143400-54167000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr2:54143400-54176200	Strong transcription	HMEC	breast
38	chr2:54144200-54166600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr2:54144400-54164600	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr2:54144400-54166000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr2:54144400-54167800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:54144600-54165000	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr2:54144600-54165800	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr2:54144600-54166200	Strong transcription	Placenta	Placenta
45	chr2:54144600-54166400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr2:54144600-54167400	Strong transcription	Fetal Intestine Large	intestine
47	chr2:54145000-54165600	Strong transcription	Primary hematopoietic stem cells	blood
48	chr2:54145000-54165600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:54145000-54166400	Strong transcription	Primary T cells from cord blood	blood
50	chr2:54145200-54165200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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