Variant report

Variant	rs7560575
Chromosome Location	chr2:54142030-54142031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54131170..54133387-chr2:54141536..54143607,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10180492	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188834	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199444	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199995	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10432674	0.83[AFR][1000 genomes]
rs1049894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11125517	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11886024	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11889527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11890472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891000	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892759	1.00[ASN][1000 genomes]
rs11894028	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13387291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395751	0.82[EUR][1000 genomes]
rs13401719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402778	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432387	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404994	1.00[ASN][1000 genomes]
rs17045242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17045513	1.00[CHB][hapmap]
rs2177791	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177792	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287347	0.80[CEU][hapmap]
rs28391754	1.00[ASN][1000 genomes]
rs28699646	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3731973	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs3930909	1.00[ASN][1000 genomes]
rs41536750	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59172147	0.89[EUR][1000 genomes]
rs60769690	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545368	0.80[CEU][hapmap]
rs6545369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545372	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6712561	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715161	0.82[EUR][1000 genomes]
rs6716978	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6723722	1.00[ASN][1000 genomes]
rs6731217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731911	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740063	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745729	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759437	1.00[ASN][1000 genomes]
rs6761648	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902931	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937421	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565152	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567225	1.00[ASN][1000 genomes]
rs7594327	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608085	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608989	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309251	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9678301	0.82[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
4	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:54113200-54144600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:54124400-54159200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:54126200-54167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:54127000-54156000	Weak transcription	Pancreas	Pancrea
11	chr2:54128000-54145400	Weak transcription	Ovary	ovary
12	chr2:54128800-54144600	Weak transcription	Fetal Brain Male	brain
13	chr2:54129000-54157600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:54130400-54146600	Weak transcription	Small Intestine	intestine
15	chr2:54133000-54142200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:54133000-54142200	Weak transcription	Fetal Stomach	stomach
17	chr2:54133000-54145400	Weak transcription	Brain Germinal Matrix	brain
18	chr2:54133000-54151800	Weak transcription	Psoas Muscle	Psoas
19	chr2:54133000-54153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:54133000-54157800	Weak transcription	Colonic Mucosa	Colon
21	chr2:54133200-54154800	Weak transcription	Aorta	Aorta
22	chr2:54133400-54145600	Weak transcription	Esophagus	oesophagus
23	chr2:54133400-54150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:54133400-54151800	Weak transcription	Lung	lung
25	chr2:54133400-54154800	Weak transcription	Spleen	Spleen
26	chr2:54133600-54151800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr2:54133600-54152000	Weak transcription	Right Ventricle	heart
28	chr2:54133800-54145400	Weak transcription	Thymus	Thymus
29	chr2:54135000-54142200	Weak transcription	Fetal Muscle Leg	muscle
30	chr2:54135000-54144600	Weak transcription	Brain Substantia Nigra	brain
31	chr2:54135000-54148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr2:54135000-54149400	Weak transcription	NHLF	lung
33	chr2:54135200-54144600	Weak transcription	Brain Angular Gyrus	brain
34	chr2:54135200-54145200	Weak transcription	Fetal Brain Female	brain
35	chr2:54135200-54146200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr2:54135200-54147400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr2:54135400-54146200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr2:54135600-54143000	Weak transcription	Left Ventricle	heart
39	chr2:54135600-54143200	Weak transcription	Fetal Kidney	kidney
40	chr2:54135600-54144600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr2:54135600-54145000	Weak transcription	Colon Smooth Muscle	Colon
42	chr2:54135600-54145200	Weak transcription	Brain Hippocampus Middle	brain
43	chr2:54135600-54145600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr2:54135600-54146600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr2:54135600-54172200	Weak transcription	Fetal Heart	heart
46	chr2:54136000-54144600	Weak transcription	K562	blood
47	chr2:54137200-54142200	Weak transcription	Fetal Intestine Small	intestine
48	chr2:54137200-54144400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr2:54137200-54144600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr2:54137200-54146600	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links