Variant report

Variant	rs60769690
Chromosome Location	chr2:54105490-54105491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54098037..54100079-chr2:54104829..54107003,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068878	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10180492	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188834	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190353	0.83[AMR][1000 genomes]
rs10199444	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199995	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205469	1.00[ASN][1000 genomes]
rs10208649	0.95[EUR][1000 genomes]
rs10209918	1.00[ASN][1000 genomes]
rs1049894	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11125517	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884857	0.83[AMR][1000 genomes]
rs11886024	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887593	0.83[AMR][1000 genomes]
rs11889527	0.83[AMR][1000 genomes]
rs11890472	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891000	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892759	1.00[ASN][1000 genomes]
rs11894028	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904365	0.83[AMR][1000 genomes]
rs13382257	1.00[ASN][1000 genomes]
rs13387291	1.00[ASN][1000 genomes]
rs13389673	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395751	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13401491	0.83[AMR][1000 genomes]
rs13401719	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402778	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408425	1.00[ASN][1000 genomes]
rs13417051	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432387	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404994	1.00[ASN][1000 genomes]
rs17045242	1.00[ASN][1000 genomes]
rs2112120	0.83[AMR][1000 genomes]
rs2161083	0.83[AMR][1000 genomes]
rs2177791	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177792	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391754	1.00[ASN][1000 genomes]
rs28571698	0.83[AMR][1000 genomes]
rs28699646	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3930909	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41536750	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58920915	0.83[AMR][1000 genomes]
rs59172147	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60776154	0.83[AMR][1000 genomes]
rs6545367	1.00[ASN][1000 genomes]
rs6545369	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545372	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6712561	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715161	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6719990	0.83[AMR][1000 genomes]
rs6723722	1.00[ASN][1000 genomes]
rs6730494	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6731217	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731911	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740063	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745729	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748686	0.83[AMR][1000 genomes]
rs6751340	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756424	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759437	1.00[ASN][1000 genomes]
rs6761648	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902931	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904915	0.83[AMR][1000 genomes]
rs72906711	0.83[AMR][1000 genomes]
rs72906714	0.83[AMR][1000 genomes]
rs73937421	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559651	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560575	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565152	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567225	1.00[ASN][1000 genomes]
rs7588319	0.83[AMR][1000 genomes]
rs7594327	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599335	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608085	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608989	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309251	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9678301	0.81[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54085400-54106600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:54087400-54112200	Weak transcription	Psoas Muscle	Psoas
5	chr2:54087400-54112600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:54087400-54117400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:54087400-54137600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:54087600-54110800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr2:54087600-54113600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:54087600-54116600	Weak transcription	Pancreas	Pancrea
11	chr2:54087600-54117000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
13	chr2:54087800-54112200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:54088000-54113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr2:54088400-54137200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:54088600-54138000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr2:54089800-54106200	Strong transcription	Left Ventricle	heart
18	chr2:54089800-54136000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:54090200-54107400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:54090200-54137800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:54090200-54138200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr2:54090400-54137600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:54090800-54137400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr2:54091000-54137000	Strong transcription	Fetal Thymus	thymus
25	chr2:54091000-54137800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr2:54091000-54138000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:54091200-54138000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr2:54091400-54137600	Strong transcription	Liver	Liver
29	chr2:54093800-54124000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:54094000-54110600	Weak transcription	Colon Smooth Muscle	Colon
31	chr2:54094000-54137800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:54094600-54110400	Weak transcription	Esophagus	oesophagus
33	chr2:54094800-54113200	Weak transcription	Spleen	Spleen
34	chr2:54095400-54111800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr2:54095600-54109400	Weak transcription	NHLF	lung
36	chr2:54096800-54106000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr2:54098400-54107800	Weak transcription	Right Atrium	heart
38	chr2:54099200-54137400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:54100400-54137800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr2:54100400-54137800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr2:54100400-54140200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr2:54100600-54123000	Strong transcription	Primary hematopoietic stem cells	blood
43	chr2:54100600-54137400	Strong transcription	Placenta	Placenta
44	chr2:54100600-54137800	Strong transcription	Primary B cells from cord blood	blood
45	chr2:54100600-54141200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr2:54100800-54107600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:54100800-54107800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:54100800-54138000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr2:54101000-54108000	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:54101400-54110800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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