The 2.0 version of rSNPBase

Variant report

Variant rs3930909
Chromosome Location chr2:54204922-54204923
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54198600-54209000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr2:54198600-54212000 Weak transcription Spleen Spleen
3 chr2:54198800-54205800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr2:54199000-54207200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr2:54199000-54208600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr2:54199000-54214200 Weak transcription Stomach Mucosa stomach
7 chr2:54199000-54214400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr2:54199000-54215600 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr2:54199000-54221600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr2:54199000-54228800 Weak transcription Aorta Aorta
11 chr2:54199200-54205600 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr2:54199200-54206000 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr2:54199200-54206200 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr2:54199200-54207000 Weak transcription H1 Cell Line embryonic stem cell
15 chr2:54199200-54207000 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr2:54199200-54207000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr2:54199200-54207000 Weak transcription Fetal Brain Male brain
18 chr2:54199200-54207200 Weak transcription H9 Cell Line embryonic stem cell
19 chr2:54199200-54207400 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr2:54199200-54207600 Weak transcription Brain Germinal Matrix brain
21 chr2:54199200-54207600 Weak transcription Fetal Brain Female brain
22 chr2:54199200-54207800 Weak transcription Primary hematopoietic stem cells blood
23 chr2:54199200-54208000 Weak transcription Primary monocytes fromperipheralblood blood
24 chr2:54199200-54209600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr2:54199200-54210600 Weak transcription Brain Cingulate Gyrus brain
26 chr2:54199200-54213800 Weak transcription Psoas Muscle Psoas
27 chr2:54199200-54213800 Weak transcription Small Intestine intestine
28 chr2:54199200-54214200 Weak transcription Colonic Mucosa Colon
29 chr2:54199200-54214200 Weak transcription Fetal Heart heart
30 chr2:54199200-54214200 Weak transcription Fetal Kidney kidney
31 chr2:54199200-54214200 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr2:54199200-54214200 Weak transcription Rectal Smooth Muscle rectum
33 chr2:54199200-54214200 Weak transcription NH-A brain
34 chr2:54199200-54214400 Weak transcription A549 lung
35 chr2:54199200-54214600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr2:54199400-54209600 Weak transcription HSMM muscle
37 chr2:54200000-54214200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr2:54200200-54208200 Weak transcription Primary B cells from cord blood blood
39 chr2:54200200-54208400 Weak transcription Gastric stomach
40 chr2:54200200-54211400 Strong transcription Fetal Muscle Leg muscle
41 chr2:54200200-54212800 Weak transcription HUES6 Cell Line embryonic stem cell
42 chr2:54200200-54216600 Weak transcription Right Ventricle heart
43 chr2:54200400-54209800 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr2:54200400-54218400 Weak transcription Primary T killer memory cells from peripheral blood blood
45 chr2:54200800-54208800 Strong transcription Fetal Stomach stomach
46 chr2:54201000-54207800 Strong transcription Placenta Placenta
47 chr2:54201000-54208200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr2:54201200-54205600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
49 chr2:54201200-54208200 Strong transcription Primary B cells from peripheral blood blood
50 chr2:54201200-54209000 Strong transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015