Variant report

Variant	rs1049894
Chromosome Location	chr2:54093956-54093957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54080524..54082859-chr2:54093710..54096577,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10180492	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188834	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190353	0.88[AMR][1000 genomes]
rs10198317	1.00[CHD][hapmap]
rs10199444	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199995	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10205469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10208649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs10209918	1.00[ASN][1000 genomes]
rs11125517	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs11886024	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11886366	0.83[AMR][1000 genomes]
rs11887593	0.88[AMR][1000 genomes]
rs11889527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs11890472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891000	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892759	1.00[ASN][1000 genomes]
rs11894028	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes]
rs13382257	1.00[ASN][1000 genomes]
rs13387291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389673	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395751	0.88[AMR][1000 genomes]
rs13401491	0.88[AMR][1000 genomes]
rs13401719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13402778	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13417051	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404994	1.00[ASN][1000 genomes]
rs17045242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112120	0.88[AMR][1000 genomes]
rs2161083	0.88[AMR][1000 genomes]
rs2177791	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177792	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287347	0.80[CEU][hapmap]
rs28391754	1.00[ASN][1000 genomes]
rs28571698	0.88[AMR][1000 genomes]
rs28699646	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3731973	0.88[LWK][hapmap]
rs3930909	1.00[ASN][1000 genomes]
rs41536750	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58920915	0.88[AMR][1000 genomes]
rs59172147	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60769690	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60776154	0.88[AMR][1000 genomes]
rs6545367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545368	0.80[CEU][hapmap]
rs6545369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545372	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545382	0.83[AMR][1000 genomes]
rs6712561	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715161	0.88[AMR][1000 genomes]
rs6716978	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6719990	0.88[AMR][1000 genomes]
rs6723722	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6730494	0.88[AMR][1000 genomes]
rs6731217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731911	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740063	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745729	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748686	0.88[AMR][1000 genomes]
rs6751340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759437	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761648	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724387	1.00[ASN][1000 genomes]
rs72902931	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904915	0.88[AMR][1000 genomes]
rs72906704	0.83[AMR][1000 genomes]
rs72906711	0.88[AMR][1000 genomes]
rs72906714	0.88[AMR][1000 genomes]
rs73937421	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556936	0.83[AMR][1000 genomes]
rs7559651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7560575	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565152	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567225	1.00[ASN][1000 genomes]
rs7583508	0.83[AMR][1000 genomes]
rs7588319	0.88[AMR][1000 genomes]
rs7594327	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599335	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608085	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608989	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309251	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54074800-54096600	Weak transcription	Hela-S3	cervix
2	chr2:54081800-54094400	Weak transcription	Small Intestine	intestine
3	chr2:54084000-54102000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:54085400-54106600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:54086600-54101200	Weak transcription	Fetal Brain Male	brain
6	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:54087400-54097400	Strong transcription	Primary B cells from cord blood	blood
9	chr2:54087400-54112200	Weak transcription	Psoas Muscle	Psoas
10	chr2:54087400-54112600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:54087400-54117400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:54087400-54137600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:54087600-54100800	Weak transcription	Brain Angular Gyrus	brain
14	chr2:54087600-54110800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr2:54087600-54113600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:54087600-54116600	Weak transcription	Pancreas	Pancrea
17	chr2:54087600-54117000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
19	chr2:54087800-54112200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr2:54088000-54113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:54088200-54100800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr2:54088400-54137200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:54088600-54138000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr2:54089200-54104400	Strong transcription	Osteobl	bone
25	chr2:54089400-54095400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr2:54089800-54096800	Strong transcription	Fetal Muscle Leg	muscle
27	chr2:54089800-54106200	Strong transcription	Left Ventricle	heart
28	chr2:54089800-54136000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr2:54090000-54098800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr2:54090200-54095400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr2:54090200-54096600	Strong transcription	Fetal Intestine Large	intestine
32	chr2:54090200-54097000	Strong transcription	HepG2	liver
33	chr2:54090200-54097600	Strong transcription	HSMM	muscle
34	chr2:54090200-54103600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:54090200-54107400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:54090200-54137800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr2:54090200-54138200	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr2:54090400-54094000	Strong transcription	Fetal Kidney	kidney
39	chr2:54090400-54094600	Strong transcription	Lung	lung
40	chr2:54090400-54095000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr2:54090400-54096800	Strong transcription	Stomach Smooth Muscle	stomach
42	chr2:54090400-54097000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr2:54090400-54098000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr2:54090400-54098600	Strong transcription	Primary T cells from cord blood	blood
45	chr2:54090400-54103800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr2:54090400-54137600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:54090600-54095400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr2:54090600-54095400	Strong transcription	Brain Hippocampus Middle	brain
49	chr2:54090600-54095600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr2:54090600-54096800	Strong transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links