The 2.0 version of rSNPBase

Variant report

Variant rs11891000
Chromosome Location chr2:54174693-54174694
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54087200-54176000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
2 chr2:54087600-54187600 Weak transcription Stomach Mucosa stomach
3 chr2:54108200-54177400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr2:54109800-54179800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr2:54139200-54176600 Strong transcription Breast Myoepithelial Primary Cells Breast
6 chr2:54139200-54177000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr2:54139400-54176200 Strong transcription HUES64 Cell Line embryonic stem cell
8 chr2:54139600-54177000 Strong transcription HUES6 Cell Line embryonic stem cell
9 chr2:54143000-54177600 Strong transcription HepG2 liver
10 chr2:54143400-54176200 Strong transcription HMEC breast
11 chr2:54149800-54177000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr2:54151000-54189800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr2:54153200-54179800 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr2:54153400-54194600 Weak transcription Fetal Brain Male brain
15 chr2:54156600-54188000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr2:54156600-54190000 Weak transcription Spleen Spleen
17 chr2:54159200-54177000 Weak transcription Pancreas Pancrea
18 chr2:54159200-54177200 Weak transcription Right Ventricle heart
19 chr2:54159200-54188000 Weak transcription Colonic Mucosa Colon
20 chr2:54159200-54188000 Weak transcription Esophagus oesophagus
21 chr2:54159200-54188200 Weak transcription Small Intestine intestine
22 chr2:54159200-54189400 Weak transcription Aorta Aorta
23 chr2:54159200-54189800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr2:54159400-54195800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr2:54160800-54177200 Weak transcription Lung lung
26 chr2:54160800-54179400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr2:54161600-54189800 Weak transcription Ovary ovary
28 chr2:54163600-54180400 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr2:54164000-54176400 Weak transcription Fetal Brain Female brain
30 chr2:54164200-54177000 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr2:54164800-54176600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr2:54167000-54176400 Weak transcription NHEK skin
33 chr2:54167600-54176400 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr2:54169000-54177400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr2:54169200-54176400 Strong transcription HUES48 Cell Line embryonic stem cell
36 chr2:54170000-54176200 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr2:54170000-54176800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr2:54171000-54188600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr2:54171800-54176200 Strong transcription iPS-20b Cell Line embryonic stem cell
40 chr2:54172000-54176200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr2:54172000-54176200 Strong transcription NH-A brain
42 chr2:54172400-54176000 Strong transcription Primary T cells fromperipheralblood blood
43 chr2:54172400-54176000 Strong transcription Duodenum Mucosa Duodenum
44 chr2:54172400-54176600 Weak transcription Brain Cingulate Gyrus brain
45 chr2:54172400-54177000 Strong transcription Dnd41 blood
46 chr2:54172600-54175000 Strong transcription H1 Cell Line embryonic stem cell
47 chr2:54172600-54176200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
48 chr2:54172600-54176200 Strong transcription Fetal Muscle Trunk muscle
49 chr2:54172600-54176200 Strong transcription Fetal Thymus thymus
50 chr2:54172600-54176400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015