The 2.0 version of rSNPBase

Variant report

Variant rs28391754
Chromosome Location chr2:54030170-54030171
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54015200-54038200 Weak transcription Small Intestine intestine
2 chr2:54015200-54046200 Weak transcription H9 Cell Line embryonic stem cell
3 chr2:54015200-54046200 Weak transcription Aorta Aorta
4 chr2:54015200-54051600 Weak transcription Stomach Mucosa stomach
5 chr2:54015200-54053800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr2:54015600-54035600 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr2:54015600-54035800 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr2:54015600-54054600 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr2:54015800-54038400 Weak transcription Fetal Heart heart
10 chr2:54015800-54054000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr2:54016000-54031600 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr2:54016400-54043000 Weak transcription Gastric stomach
13 chr2:54017400-54031000 Weak transcription Ovary ovary
14 chr2:54020200-54046200 Weak transcription Colonic Mucosa Colon
15 chr2:54020600-54047200 Strong transcription Primary T helper cells fromperipheralblood blood
16 chr2:54020600-54048400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr2:54020600-54048600 Strong transcription Osteobl bone
18 chr2:54021000-54030600 Strong transcription HUES48 Cell Line embryonic stem cell
19 chr2:54021000-54030600 Strong transcription HepG2 liver
20 chr2:54021000-54047200 Strong transcription Primary B cells from peripheral blood blood
21 chr2:54021000-54047200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
22 chr2:54021000-54047400 Strong transcription Monocytes-CD14+_RO01746 blood
23 chr2:54021000-54048000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr2:54021200-54030600 Strong transcription Cortex derived primary cultured neurospheres brain
25 chr2:54021200-54047200 Strong transcription Placenta Placenta
26 chr2:54021200-54047600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr2:54021400-54047000 Strong transcription Primary T helper cells PMA-I stimulated --
28 chr2:54021400-54047000 Strong transcription Fetal Thymus thymus
29 chr2:54021600-54035000 Strong transcription Liver Liver
30 chr2:54021600-54046400 Strong transcription HUES64 Cell Line embryonic stem cell
31 chr2:54021800-54047600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr2:54022000-54030800 Strong transcription iPS-20b Cell Line embryonic stem cell
33 chr2:54022000-54030800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr2:54022000-54032000 Strong transcription HUES6 Cell Line embryonic stem cell
35 chr2:54022000-54039400 Strong transcription Breast Myoepithelial Primary Cells Breast
36 chr2:54022000-54044800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr2:54022000-54047000 Strong transcription Primary T cells fromperipheralblood blood
38 chr2:54022000-54047000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr2:54022000-54047200 Strong transcription Primary T regulatory cells fromperipheralblood blood
40 chr2:54022000-54047600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr2:54022200-54030200 Strong transcription Skeletal Muscle Female skeletal muscle
42 chr2:54022200-54030400 Strong transcription Muscle Satellite Cultured Cells --
43 chr2:54022200-54030800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr2:54022200-54032000 Strong transcription Duodenum Mucosa Duodenum
45 chr2:54022200-54039000 Strong transcription Fetal Intestine Large intestine
46 chr2:54022200-54046200 Strong transcription Rectal Mucosa Donor 29 rectum
47 chr2:54022200-54046600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr2:54022200-54047200 Strong transcription Duodenum Smooth Muscle Duodenum
49 chr2:54022400-54030400 Strong transcription Primary B cells from cord blood blood
50 chr2:54023000-54053800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015