Variant report

Variant	rs10262997
Chromosome Location	chr7:137441167-137441168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137423940..137426164-chr7:137440661..137442413,2	K562	blood:
2	chr7:137439231..137441193-chr7:137444699..137446812,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10224447	1.00[EUR][1000 genomes]
rs10226208	1.00[EUR][1000 genomes]
rs10243295	1.00[EUR][1000 genomes]
rs10250856	1.00[EUR][1000 genomes]
rs10260158	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263154	0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267187	1.00[EUR][1000 genomes]
rs10268052	1.00[EUR][1000 genomes]
rs10271504	1.00[EUR][1000 genomes]
rs10274267	1.00[EUR][1000 genomes]
rs10279889	1.00[EUR][1000 genomes]
rs10281950	1.00[EUR][1000 genomes]
rs28398841	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28892326	1.00[EUR][1000 genomes]
rs35323708	1.00[EUR][1000 genomes]
rs57866951	1.00[EUR][1000 genomes]
rs57960588	1.00[EUR][1000 genomes]
rs58042762	1.00[EUR][1000 genomes]
rs6467716	0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462637	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462653	1.00[EUR][1000 genomes]
rs73462656	1.00[EUR][1000 genomes]
rs73728804	1.00[EUR][1000 genomes]
rs73730087	1.00[EUR][1000 genomes]
rs73730089	1.00[EUR][1000 genomes]
rs73730093	1.00[EUR][1000 genomes]
rs73730096	1.00[EUR][1000 genomes]
rs7780632	1.00[EUR][1000 genomes]
rs7787968	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7793252	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137437800-137442000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:137437800-137442600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:137438000-137441600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:137438000-137442400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:137438400-137442400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:137438600-137441800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137438600-137442400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:137438800-137441200	Enhancers	Fetal Brain Male	brain
9	chr7:137438800-137441600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:137439000-137442400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:137439000-137442600	Enhancers	Osteobl	bone
12	chr7:137439400-137441200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:137439400-137441800	Weak transcription	HSMMtube	muscle
14	chr7:137439400-137442000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:137439400-137442200	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:137439400-137444400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:137439400-137444600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:137439600-137441800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:137439600-137442200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:137439600-137444600	Weak transcription	Brain Germinal Matrix	brain
21	chr7:137439600-137445200	Weak transcription	Brain Anterior Caudate	brain
22	chr7:137439800-137441200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:137440000-137442200	Enhancers	NHDF-Ad	bronchial
24	chr7:137440200-137441800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:137440200-137441800	Enhancers	Brain Substantia Nigra	brain
26	chr7:137440200-137442200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:137440200-137442200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:137440200-137444600	Weak transcription	Fetal Brain Female	brain
29	chr7:137440400-137441400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:137440400-137441400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:137440400-137442600	Enhancers	HSMM	muscle
32	chr7:137440600-137441600	Enhancers	Brain Hippocampus Middle	brain
33	chr7:137440600-137442200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:137440600-137444600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:137440600-137453200	Weak transcription	Aorta	Aorta
36	chr7:137440800-137441800	Weak transcription	GM12878-XiMat	blood
37	chr7:137440800-137442000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:137440800-137442200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:137440800-137442400	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr7:137440800-137442400	Enhancers	NH-A	brain
41	chr7:137441000-137441800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:137441000-137444600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:137441000-137464400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links