Variant report

Variant	rs7780632
Chromosome Location	chr7:137548267-137548268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137548182..137551926-chr7:137553718..137556489,3	K562	blood:
2	chr7:137544294..137548451-chr7:137549639..137552753,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10224447	1.00[EUR][1000 genomes]
rs10226208	1.00[EUR][1000 genomes]
rs10243295	1.00[EUR][1000 genomes]
rs10250856	1.00[EUR][1000 genomes]
rs10260158	1.00[EUR][1000 genomes]
rs10262997	1.00[EUR][1000 genomes]
rs10263154	1.00[EUR][1000 genomes]
rs10267187	1.00[EUR][1000 genomes]
rs10268052	1.00[EUR][1000 genomes]
rs10271504	1.00[EUR][1000 genomes]
rs10274267	1.00[EUR][1000 genomes]
rs10279889	1.00[EUR][1000 genomes]
rs10281950	1.00[EUR][1000 genomes]
rs28398841	1.00[EUR][1000 genomes]
rs28892326	1.00[EUR][1000 genomes]
rs35323708	1.00[EUR][1000 genomes]
rs57866951	1.00[EUR][1000 genomes]
rs57960588	1.00[EUR][1000 genomes]
rs58042762	1.00[EUR][1000 genomes]
rs6467716	1.00[EUR][1000 genomes]
rs73462637	1.00[EUR][1000 genomes]
rs73462639	1.00[EUR][1000 genomes]
rs73462653	1.00[EUR][1000 genomes]
rs73462656	1.00[EUR][1000 genomes]
rs73728804	1.00[EUR][1000 genomes]
rs73730087	1.00[EUR][1000 genomes]
rs73730089	1.00[EUR][1000 genomes]
rs73730093	1.00[EUR][1000 genomes]
rs73730096	1.00[EUR][1000 genomes]
rs7787968	1.00[EUR][1000 genomes]
rs7793252	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137532200-137556400	Weak transcription	Esophagus	oesophagus
2	chr7:137532400-137549800	Weak transcription	A549	lung
3	chr7:137532400-137552200	Weak transcription	Pancreas	Pancrea
4	chr7:137533800-137549400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:137533800-137551600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:137533800-137575400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:137534200-137563000	Weak transcription	HMEC	breast
8	chr7:137535000-137552000	Weak transcription	Psoas Muscle	Psoas
9	chr7:137535200-137562600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:137536200-137552000	Weak transcription	Gastric	stomach
11	chr7:137536200-137557800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:137536800-137549800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:137537200-137549800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:137537400-137550600	Weak transcription	GM12878-XiMat	blood
15	chr7:137537400-137559000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:137537800-137551800	Weak transcription	Fetal Intestine Large	intestine
17	chr7:137540800-137549600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:137540800-137557200	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:137542000-137552000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:137542000-137558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:137542600-137557200	Weak transcription	Spleen	Spleen
22	chr7:137543000-137550800	Weak transcription	Liver	Liver
23	chr7:137543400-137550600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:137543400-137553400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:137543400-137557200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:137543400-137557800	Strong transcription	NH-A	brain
27	chr7:137543400-137566800	Strong transcription	Placenta	Placenta
28	chr7:137543600-137550600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:137543600-137553200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:137543800-137557400	Strong transcription	Osteobl	bone
31	chr7:137544000-137550800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:137544000-137556200	Weak transcription	Fetal Intestine Small	intestine
33	chr7:137544200-137549000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:137544200-137549200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:137544200-137549600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:137544200-137553200	Strong transcription	HSMM	muscle
37	chr7:137544200-137553400	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr7:137544200-137556000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:137544600-137549800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr7:137544800-137549600	Weak transcription	Primary B cells from cord blood	blood
41	chr7:137545000-137550000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr7:137545000-137564200	Weak transcription	Small Intestine	intestine
43	chr7:137545200-137549600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:137545200-137553200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:137545400-137548400	Strong transcription	Aorta	Aorta
46	chr7:137545400-137548600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:137545400-137549000	Strong transcription	NHDF-Ad	bronchial
48	chr7:137545400-137549200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:137545400-137553000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:137545600-137549800	Weak transcription	Brain Anterior Caudate	brain

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