Variant report

Variant	rs10268052
Chromosome Location	chr7:137347688-137347689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137345989..137348723-chr7:137350389..137352699,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10224447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10226208	1.00[EUR][1000 genomes]
rs10233877	0.98[AFR][1000 genomes]
rs10243295	1.00[EUR][1000 genomes]
rs10250856	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260158	1.00[EUR][1000 genomes]
rs10262997	1.00[EUR][1000 genomes]
rs10263154	1.00[EUR][1000 genomes]
rs10267187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274267	1.00[EUR][1000 genomes]
rs10279889	1.00[EUR][1000 genomes]
rs10281950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28398841	1.00[EUR][1000 genomes]
rs28892326	1.00[EUR][1000 genomes]
rs35323708	1.00[EUR][1000 genomes]
rs57866951	1.00[EUR][1000 genomes]
rs57960588	1.00[EUR][1000 genomes]
rs58042762	1.00[EUR][1000 genomes]
rs6467716	1.00[EUR][1000 genomes]
rs73462637	1.00[EUR][1000 genomes]
rs73462639	1.00[EUR][1000 genomes]
rs73462653	1.00[EUR][1000 genomes]
rs73462656	1.00[EUR][1000 genomes]
rs73728804	1.00[EUR][1000 genomes]
rs73730087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730089	1.00[EUR][1000 genomes]
rs73730093	1.00[EUR][1000 genomes]
rs73730096	1.00[EUR][1000 genomes]
rs7780632	1.00[EUR][1000 genomes]
rs7787968	1.00[EUR][1000 genomes]
rs7793252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
2	chr7:137328400-137348000	Weak transcription	Fetal Brain Male	brain
3	chr7:137340800-137351800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:137341600-137351800	Weak transcription	NHDF-Ad	bronchial
5	chr7:137341800-137351800	Weak transcription	NH-A	brain
6	chr7:137342200-137349800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:137342400-137351600	Weak transcription	HSMM	muscle
8	chr7:137342400-137352000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:137342600-137348000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:137342600-137349600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:137342600-137351400	Weak transcription	HSMMtube	muscle
12	chr7:137342600-137352000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:137343200-137352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:137343200-137353000	Weak transcription	Right Atrium	heart
15	chr7:137343400-137348200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:137343600-137349600	Weak transcription	Osteobl	bone
17	chr7:137343800-137359000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:137344000-137349600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:137344000-137349800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:137344000-137350000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:137344000-137350400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:137344000-137358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:137344200-137349800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:137344400-137349600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:137346600-137348200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:137346600-137349800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:137346600-137352600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:137346600-137354400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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