Variant report

Variant	rs57960588
Chromosome Location	chr7:137360097-137360098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10224447	1.00[EUR][1000 genomes]
rs10226208	1.00[EUR][1000 genomes]
rs10243295	1.00[EUR][1000 genomes]
rs10250856	1.00[EUR][1000 genomes]
rs10260158	1.00[EUR][1000 genomes]
rs10262997	1.00[EUR][1000 genomes]
rs10263154	1.00[EUR][1000 genomes]
rs10267187	1.00[EUR][1000 genomes]
rs10268052	1.00[EUR][1000 genomes]
rs10271504	1.00[EUR][1000 genomes]
rs10274267	1.00[EUR][1000 genomes]
rs10279889	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10281950	1.00[EUR][1000 genomes]
rs28398841	1.00[EUR][1000 genomes]
rs28892326	1.00[EUR][1000 genomes]
rs35323708	1.00[EUR][1000 genomes]
rs57866951	1.00[EUR][1000 genomes]
rs58042762	1.00[EUR][1000 genomes]
rs6467716	1.00[EUR][1000 genomes]
rs73462637	1.00[EUR][1000 genomes]
rs73462639	1.00[EUR][1000 genomes]
rs73462653	1.00[EUR][1000 genomes]
rs73462656	1.00[EUR][1000 genomes]
rs73728804	1.00[EUR][1000 genomes]
rs73730087	1.00[EUR][1000 genomes]
rs73730089	1.00[EUR][1000 genomes]
rs73730093	1.00[EUR][1000 genomes]
rs73730096	1.00[EUR][1000 genomes]
rs7780632	1.00[EUR][1000 genomes]
rs7787968	1.00[EUR][1000 genomes]
rs7793252	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137355800-137370600	Weak transcription	Aorta	Aorta
2	chr7:137356000-137361800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:137356400-137365800	Weak transcription	HSMM	muscle
4	chr7:137357000-137366400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:137357000-137367600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:137357200-137361000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:137357400-137360800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:137357400-137365600	Weak transcription	Osteobl	bone
9	chr7:137358000-137360200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:137358000-137360600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:137358000-137360800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:137358200-137361000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:137358600-137360600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:137359200-137365600	Weak transcription	HSMMtube	muscle
15	chr7:137359400-137360200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:137359600-137360800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:137359600-137363200	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links