Variant report

Variant	rs10281950
Chromosome Location	chr7:137352411-137352412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137350182..137352785-chr7:137361022..137363744,2	K562	blood:
2	chr7:137345989..137348723-chr7:137350389..137352699,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10224447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10226208	1.00[EUR][1000 genomes]
rs10243295	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10250856	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260158	1.00[EUR][1000 genomes]
rs10261211	1.00[TSI][hapmap]
rs10262997	1.00[EUR][1000 genomes]
rs10263154	1.00[EUR][1000 genomes]
rs10267187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274267	1.00[EUR][1000 genomes]
rs10279889	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28398841	1.00[EUR][1000 genomes]
rs28892326	1.00[EUR][1000 genomes]
rs35323708	1.00[EUR][1000 genomes]
rs57866951	1.00[EUR][1000 genomes]
rs57960588	1.00[EUR][1000 genomes]
rs58042762	1.00[EUR][1000 genomes]
rs6467716	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6943553	1.00[ASW][hapmap]
rs73462637	1.00[EUR][1000 genomes]
rs73462639	1.00[EUR][1000 genomes]
rs73462653	1.00[EUR][1000 genomes]
rs73462656	1.00[EUR][1000 genomes]
rs73728804	1.00[EUR][1000 genomes]
rs73730087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730089	1.00[EUR][1000 genomes]
rs73730093	1.00[EUR][1000 genomes]
rs73730096	1.00[EUR][1000 genomes]
rs7780632	1.00[EUR][1000 genomes]
rs7787968	1.00[EUR][1000 genomes]
rs7793252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
2	chr7:137343200-137353000	Weak transcription	Right Atrium	heart
3	chr7:137343800-137359000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:137344000-137358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:137346600-137352600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:137346600-137354400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:137349600-137352800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:137349800-137354200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:137350000-137355400	Weak transcription	GM12878-XiMat	blood
10	chr7:137350200-137352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:137350400-137356800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:137350400-137358000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:137350600-137358000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:137351400-137357000	Enhancers	HSMMtube	muscle
15	chr7:137351600-137352600	Enhancers	Osteobl	bone
16	chr7:137351600-137356400	Enhancers	HSMM	muscle
17	chr7:137351800-137353600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:137351800-137356200	Enhancers	NH-A	brain
19	chr7:137351800-137356200	Enhancers	NHDF-Ad	bronchial
20	chr7:137352000-137353000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:137352000-137353600	Enhancers	NHLF	lung
22	chr7:137352000-137354200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:137352000-137355000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:137352000-137356000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:137352000-137356200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:137352000-137356200	Enhancers	HMEC	breast
27	chr7:137352000-137357000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:137352200-137353200	Enhancers	NHEK	skin
29	chr7:137352400-137352600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr7:137352400-137352600	Enhancers	Hela-S3	cervix
31	chr7:137352400-137353000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:137352400-137353000	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links