Variant report

Variant	rs73728804
Chromosome Location	chr7:137392767-137392768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10224447	1.00[EUR][1000 genomes]
rs10226208	1.00[EUR][1000 genomes]
rs10243295	1.00[EUR][1000 genomes]
rs10250856	1.00[EUR][1000 genomes]
rs10260158	1.00[EUR][1000 genomes]
rs10262997	1.00[EUR][1000 genomes]
rs10263154	1.00[EUR][1000 genomes]
rs10267187	1.00[EUR][1000 genomes]
rs10268052	1.00[EUR][1000 genomes]
rs10271504	1.00[EUR][1000 genomes]
rs10274267	1.00[EUR][1000 genomes]
rs10279889	1.00[EUR][1000 genomes]
rs10281950	1.00[EUR][1000 genomes]
rs28398841	1.00[EUR][1000 genomes]
rs28892326	1.00[EUR][1000 genomes]
rs35323708	1.00[EUR][1000 genomes]
rs57866951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57960588	1.00[EUR][1000 genomes]
rs58042762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6467716	1.00[EUR][1000 genomes]
rs73462637	1.00[EUR][1000 genomes]
rs73462639	1.00[EUR][1000 genomes]
rs73462653	1.00[EUR][1000 genomes]
rs73462656	1.00[EUR][1000 genomes]
rs73730087	1.00[EUR][1000 genomes]
rs73730089	1.00[EUR][1000 genomes]
rs73730093	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730096	1.00[EUR][1000 genomes]
rs7780632	1.00[EUR][1000 genomes]
rs7787968	1.00[EUR][1000 genomes]
rs7793252	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137385000-137398400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:137388800-137399600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:137390000-137400000	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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