Variant report

Variant	rs57866951
Chromosome Location	chr7:137379837-137379838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10224447	1.00[EUR][1000 genomes]
rs10226208	1.00[EUR][1000 genomes]
rs10243295	1.00[EUR][1000 genomes]
rs10250856	1.00[EUR][1000 genomes]
rs10260158	1.00[EUR][1000 genomes]
rs10262997	1.00[EUR][1000 genomes]
rs10263154	1.00[EUR][1000 genomes]
rs10267187	1.00[EUR][1000 genomes]
rs10268052	1.00[EUR][1000 genomes]
rs10271504	1.00[EUR][1000 genomes]
rs10274267	1.00[EUR][1000 genomes]
rs10279889	1.00[EUR][1000 genomes]
rs10281950	1.00[EUR][1000 genomes]
rs28398841	1.00[EUR][1000 genomes]
rs28892326	1.00[EUR][1000 genomes]
rs35323708	1.00[EUR][1000 genomes]
rs57960588	1.00[EUR][1000 genomes]
rs58042762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6467716	1.00[EUR][1000 genomes]
rs73462637	1.00[EUR][1000 genomes]
rs73462639	1.00[EUR][1000 genomes]
rs73462653	1.00[EUR][1000 genomes]
rs73462656	1.00[EUR][1000 genomes]
rs73728804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730087	1.00[EUR][1000 genomes]
rs73730089	1.00[EUR][1000 genomes]
rs73730093	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730096	1.00[EUR][1000 genomes]
rs7780632	1.00[EUR][1000 genomes]
rs7787968	1.00[EUR][1000 genomes]
rs7793252	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137370400-137380600	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137370800-137384600	Weak transcription	Fetal Brain Female	brain
3	chr7:137373400-137380800	Weak transcription	NH-A	brain
4	chr7:137374000-137387400	Weak transcription	Aorta	Aorta
5	chr7:137374400-137380600	Weak transcription	HSMMtube	muscle
6	chr7:137375800-137382400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:137378600-137380200	Enhancers	HSMM	muscle
8	chr7:137379000-137381400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137379200-137380000	Enhancers	NHDF-Ad	bronchial
10	chr7:137379200-137380200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:137379200-137382000	Enhancers	Osteobl	bone
12	chr7:137379200-137383800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:137379600-137381600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:137379800-137380200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:137379800-137380600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:137379800-137381600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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