Variant report

Variant	rs7793252
Chromosome Location	chr7:137355658-137355659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10224447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10226208	1.00[EUR][1000 genomes]
rs10243295	1.00[EUR][1000 genomes]
rs10250856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260158	1.00[EUR][1000 genomes]
rs10262997	1.00[EUR][1000 genomes]
rs10263154	1.00[EUR][1000 genomes]
rs10267187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274267	1.00[EUR][1000 genomes]
rs10279889	1.00[EUR][1000 genomes]
rs10281950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28398841	1.00[EUR][1000 genomes]
rs28892326	1.00[EUR][1000 genomes]
rs35323708	1.00[EUR][1000 genomes]
rs57866951	1.00[EUR][1000 genomes]
rs57960588	1.00[EUR][1000 genomes]
rs58042762	1.00[EUR][1000 genomes]
rs6467716	1.00[EUR][1000 genomes]
rs73462637	1.00[EUR][1000 genomes]
rs73462639	1.00[EUR][1000 genomes]
rs73462653	1.00[EUR][1000 genomes]
rs73462656	1.00[EUR][1000 genomes]
rs73728804	1.00[EUR][1000 genomes]
rs73730087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730089	1.00[EUR][1000 genomes]
rs73730093	1.00[EUR][1000 genomes]
rs73730096	1.00[EUR][1000 genomes]
rs7780632	1.00[EUR][1000 genomes]
rs7787968	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137343800-137359000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:137344000-137358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:137350400-137356800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:137350400-137358000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:137350600-137358000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:137351400-137357000	Enhancers	HSMMtube	muscle
7	chr7:137351600-137356400	Enhancers	HSMM	muscle
8	chr7:137351800-137356200	Enhancers	NH-A	brain
9	chr7:137351800-137356200	Enhancers	NHDF-Ad	bronchial
10	chr7:137352000-137356000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:137352000-137356200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:137352000-137356200	Enhancers	HMEC	breast
13	chr7:137352000-137357000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:137352800-137356800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:137353200-137356000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:137353600-137357400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:137354000-137356600	Weak transcription	Fetal Heart	heart
18	chr7:137354600-137355800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:137354600-137355800	Enhancers	NHEK	skin
20	chr7:137354600-137357000	Enhancers	Fetal Brain Male	brain
21	chr7:137355000-137355800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:137355000-137355800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:137355000-137355800	Enhancers	Aorta	Aorta
24	chr7:137355000-137355800	Enhancers	NHLF	lung
25	chr7:137355000-137356200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:137355000-137356200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:137355000-137357000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:137355200-137355800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:137355200-137355800	Enhancers	Adipose Nuclei	Adipose
30	chr7:137355400-137355800	Enhancers	Left Ventricle	heart
31	chr7:137355400-137356200	Enhancers	GM12878-XiMat	blood
32	chr7:137355400-137356400	Enhancers	Brain Anterior Caudate	brain
33	chr7:137355600-137355800	Flanking Active TSS	Osteobl	bone
34	chr7:137355600-137356200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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