Variant report

Variant	rs10419223
Chromosome Location	chr19:53238471-53238472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZKSCAN1	chr19:53238286-53238603	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr19:53237895-53238657	GM12878	blood:	n/a	n/a
3	GABPA	chr19:53238017-53238582	K562	blood:	n/a	n/a
4	SRF	chr19:53238102-53238592	MCF-7	breast:	n/a	n/a
5	CTCF	chr19:53238327-53238497	LNCaP	prostate:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
6	SPI1	chr19:53238110-53238514	GM12891	blood:	n/a	n/a
7	CTCF	chr19:53238360-53238510	HL-60	blood:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
8	GTF2F1	chr19:53238178-53238597	Hela-S3	cervix:	n/a	n/a
9	CTCF	chr19:53237592-53238778	SK-N-SH	brain:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
10	POLR2A	chr19:53237884-53238769	HepG2	liver:	n/a	n/a
11	MXI1	chr19:53237812-53238547	GM12878	blood:	n/a	n/a
12	CTCF	chr19:53238340-53238490	NHEK	skin:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
13	CTCF	chr19:53238360-53238510	AG04449	skin:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
14	BHLHE40	chr19:53238124-53238500	K562	blood:	n/a	n/a
15	CTCF	chr19:53238202-53238607	Spleen_OC	spleen:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
16	CHD2	chr19:53237858-53238552	Hela-S3	cervix:	n/a	chr19:53238380-53238390 chr19:53238373-53238383 chr19:53237976-53237986
17	E2F4	chr19:53237950-53238574	K562	blood:	n/a	chr19:53238001-53238015 chr19:53238333-53238344 chr19:53238354-53238364 chr19:53238332-53238344
18	CTCF	chr19:53238288-53238529	Pancreas_OC	pancreas:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
19	CTCF	chr19:53238260-53238517	GM19239	blood:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
20	CTCF	chr19:53238380-53238530	GM12867	blood:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
21	CTCF	chr19:53238334-53238498	A549	lung:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
22	MAX	chr19:53237999-53238592	Hela-S3	cervix:	n/a	n/a
23	ELF1	chr19:53237897-53238589	K562	blood:	n/a	chr19:53238285-53238294 chr19:53238285-53238296 chr19:53238285-53238296 chr19:53238286-53238295
24	MAX	chr19:53238061-53238568	SK-N-SH	brain:	n/a	n/a
25	ZBTB33	chr19:53238206-53238475	HCT-116	colon:	n/a	n/a
26	CTCF	chr19:53238360-53238510	HFF	foreskin:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
27	NRF1	chr19:53237803-53238915	SK-N-SH	brain:	n/a	n/a
28	E2F6	chr19:53237804-53238606	A549	lung:	n/a	chr19:53238001-53238015 chr19:53238354-53238364 chr19:53238332-53238344
29	CTCF	chr19:53238248-53238529	NHEK	skin:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
30	SIN3AK20	chr19:53237990-53238477	SK-N-SH	brain:	n/a	n/a
31	CTCF	chr19:53238380-53238530	GM12873	blood:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
32	JUND	chr19:53238048-53238620	K562	blood:	n/a	chr19:53238248-53238256 chr19:53238322-53238336
33	RAD21	chr19:53238246-53238631	Hela-S3	cervix:	n/a	chr19:53238415-53238425 chr19:53238415-53238427 chr19:53238413-53238426
34	TAF1	chr19:53238152-53238530	SK-N-SH	brain:	n/a	n/a
35	RAD21	chr19:53237976-53238743	HCT-116	colon:	n/a	chr19:53238415-53238425 chr19:53238415-53238427 chr19:53238413-53238426
36	CTCF	chr19:53238236-53238595	GM12878	blood:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
37	POLR2A	chr19:53237984-53238602	SK-N-MC	brain:	n/a	n/a
38	MAX	chr19:53238096-53238659	GM12878	blood:	n/a	n/a
39	CTCF	chr19:53238360-53238510	GM06990	blood:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
40	POLR2A	chr19:53237998-53238566	GM12878	blood:	n/a	n/a
41	MYC	chr19:53237949-53238625	K562	blood:	n/a	n/a
42	CTCF	chr19:53238340-53238490	AG04450	lung:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
43	STAT3	chr19:53238202-53238522	MCF10A-Er-Src	breast:	n/a	n/a
44	POLR2A	chr19:53237930-53238478	Hela-S3	cervix:	n/a	n/a
45	CTCF	chr19:53238420-53238570	MCF-7	breast:	n/a	n/a
46	CTCF	chr19:53238440-53238590	HVMF	connective:	n/a	n/a
47	CTCF	chr19:53238380-53238530	HCT-116	colon:	n/a	chr19:53238412-53238425 chr19:53238409-53238427
48	ELF1	chr19:53237794-53238659	HCT-116	colon:	n/a	chr19:53238285-53238294 chr19:53238285-53238296 chr19:53238285-53238296 chr19:53238286-53238295
49	POU2F2	chr19:53237966-53238542	GM12878	blood:	n/a	n/a
50	POLR2A	chr19:53237888-53238690	HUVEC	blood vessel:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53238445-53238495	HIPEpiC	eye:	n/a
2	chr19:53238434-53238484	HCM	heart:	n/a
3	chr19:53238445-53238495	HL-60	blood:	n/a
4	chr19:53238434-53238484	BE2_C	brain:	n/a
5	chr19:53238434-53238484	ECC-1	luminal epithelium:	n/a
6	chr19:53238434-53238484	GM12878	blood:	n/a
7	chr19:53238445-53238495	K562	blood:	n/a
8	chr19:53238434-53238484	NHDF-neo	bronchial:	n/a
9	chr19:53238445-53238495	LNCaP	prostate:	n/a
10	chr19:53238434-53238484	AG04449	skin:	fetal
11	chr19:53238434-53238484	HCPEpiC	choroid plexus:	n/a
12	chr19:53238434-53238484	HL-60	blood:	n/a
13	chr19:53238445-53238495	HAEpiC	amniotic membrane:	n/a
14	chr19:53238445-53238495	AoSMC	blood vessel:	n/a
15	chr19:53238445-53238495	NHDF-neo	bronchial:	n/a
16	chr19:53238445-53238495	GM12878	blood:	n/a
17	chr19:53238445-53238495	HRCEpiC	kidney:	n/a
18	chr19:53238434-53238484	SK-N-MC	brain:	n/a
19	chr19:53238445-53238495	BE2_C	brain:	n/a
20	chr19:53238445-53238495	HUVEC	blood vessel:	n/a
21	chr19:53238434-53238484	HNPCEpiC	eye:	n/a
22	chr19:53238445-53238495	ECC-1	luminal epithelium:	n/a
23	chr19:53238434-53238484	Caco-2	colon:	n/a
24	chr19:53238445-53238495	AG10803	skin:	n/a
25	chr19:53238434-53238484	HEK293	kidney:	embryo
26	chr19:53238445-53238495	BJ	skin:	n/a
27	chr19:53238445-53238495	PFSK-1	brain:	n/a
28	chr19:53238434-53238484	T-47D	breast:	n/a
29	chr19:53238445-53238495	SK-N-MC	brain:	n/a
30	chr19:53238445-53238495	HEK293	kidney:	embryo
31	chr19:53238434-53238484	HMEC	breast:	n/a
32	chr19:53238445-53238495	IMR90	lung:	fetal
33	chr19:53238445-53238495	HPAEpiC	pulmonary alveolar:	n/a
34	chr19:53238434-53238484	AG04450	lung:	fetal
35	chr19:53238445-53238495	SK-N-SH	brain:	n/a
36	chr19:53238434-53238484	AoSMC	blood vessel:	n/a
37	chr19:53238434-53238484	GM19239	blood:	n/a
38	chr19:53238445-53238495	U87	brain:	n/a
39	chr19:53238445-53238495	CMK	blood:	n/a
40	chr19:53238434-53238484	HEEpiC	esophagus:	n/a
41	chr19:53238434-53238484	H1-hESC	embryonic stem cell:	embryo
42	chr19:53238434-53238484	NT2-D1	testis:	n/a
43	chr19:53238434-53238484	GM12892	blood:	n/a
44	chr19:53238434-53238484	CMK	blood:	n/a
45	chr19:53238445-53238495	Caco-2	colon:	n/a
46	chr19:53238445-53238495	ovcar-3	ovarian:	n/a
47	chr19:53238434-53238484	BJ	skin:	n/a
48	chr19:53238445-53238495	GM06990	blood:	n/a
49	chr19:53238445-53238495	HMEC	breast:	n/a
50	chr19:53238445-53238495	AG09319	gingival:	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
2	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
3	chr19:53237008..53239147-chr19:53540786..53542527,2	MCF-7	breast:
4	chr14:93214475..93215046-chr19:53237894..53238692,2	Hela-S3	cervix:
5	chr19:53115970..53118193-chr19:53236786..53238588,2	K562	blood:

Variant related genes	Relation type
ZNF611	TF binding region
ZNF611	CpG island
ENSG00000100600	Chromatin interaction
ENSG00000213020	Chromatin interaction
ENSG00000167766	Chromatin interaction
ENSG00000242779	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10408423	0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11084188	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11084189	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11084190	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11670853	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11671744	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1971064	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs4801931	0.95[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs707303	0.96[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7249746	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7250045	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7253411	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv833874	chr19:53058014-53257875	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv912305	chr19:53092465-53349850	Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv912306	chr19:53092465-53400760	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv912307	chr19:53092465-53433054	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv912308	chr19:53092465-53436337	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv912309	chr19:53092465-53440653	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv912310	chr19:53092465-53451291	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv912312	chr19:53103875-53296371	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv912313	chr19:53103875-53436337	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv912317	chr19:53105547-53440653	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1066762	chr19:53112568-53552217	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv912318	chr19:53118278-53451291	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	esv3489404	chr19:53121944-53391394	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
15	esv3489405	chr19:53121944-53391394	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
16	nsv432072	chr19:53144788-53554388	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
17	esv3401212	chr19:53151131-53482063	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
18	nsv912319	chr19:53152923-53241107	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
19	nsv912320	chr19:53164172-53243026	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
20	nsv912321	chr19:53186836-53451291	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
21	nsv1058903	chr19:53193570-53489633	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
22	nsv1067280	chr19:53193570-53567287	Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
23	nsv544062	chr19:53193570-53567287	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
24	nsv580030	chr19:53194344-53547394	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
25	nsv1067557	chr19:53195426-53319092	Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
26	nsv1057118	chr19:53195426-53480449	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
27	esv2599883	chr19:53199036-53262483	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
28	nsv1065345	chr19:53199614-53254617	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
29	esv3331661	chr19:53200023-53262312	Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
30	esv7362	chr19:53204293-53265963	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
31	nsv1062976	chr19:53205373-53274297	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
32	esv3388532	chr19:53206027-53266994	Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
33	nsv470152	chr19:53207182-53249348	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
34	nsv458745	chr19:53207182-53274396	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
35	nsv580031	chr19:53207182-53274396	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
36	nsv530807	chr19:53210488-53695881	Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
37	nsv833875	chr19:53211335-53391459	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
38	esv3363127	chr19:53212333-53273987	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
39	nsv1061338	chr19:53212361-53253763	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
40	nsv912322	chr19:53212361-53267506	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
41	nsv1063862	chr19:53213111-53254617	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
42	esv3350085	chr19:53213910-53275524	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
43	nsv1055617	chr19:53223123-53274297	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53236600-53238600	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr19:53236800-53238600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:53236800-53238600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:53236800-53238600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr19:53236800-53238600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:53236800-53238600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr19:53236800-53238600	Active TSS	GM12878-XiMat	blood
8	chr19:53237000-53238600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:53237000-53238600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr19:53237000-53238800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr19:53237000-53238800	Active TSS	Brain Angular Gyrus	brain
12	chr19:53237000-53238800	Active TSS	Hela-S3	cervix
13	chr19:53237200-53238600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr19:53237200-53238600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:53237200-53238600	Active TSS	Fetal Intestine Small	intestine
16	chr19:53237200-53238600	Active TSS	Rectal Smooth Muscle	rectum
17	chr19:53237200-53238600	Active TSS	NHDF-Ad	bronchial
18	chr19:53237200-53238800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr19:53237200-53238800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:53237200-53238800	Active TSS	Brain Anterior Caudate	brain
21	chr19:53237200-53238800	Active TSS	Fetal Intestine Large	intestine
22	chr19:53237200-53238800	Active TSS	A549	lung
23	chr19:53237200-53238800	Active TSS	NHLF	lung
24	chr19:53237200-53239000	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr19:53237200-53239200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr19:53237200-53239200	Active TSS	Fetal Kidney	kidney
27	chr19:53237200-53239400	Active TSS	HSMM	muscle
28	chr19:53237200-53239400	Active TSS	HSMMtube	muscle
29	chr19:53237400-53238600	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr19:53237400-53238600	Active TSS	H1 Cell Line	embryonic stem cell
31	chr19:53237400-53238600	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr19:53237400-53238600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr19:53237400-53238600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr19:53237400-53238600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr19:53237400-53238600	Active TSS	Colon Smooth Muscle	Colon
36	chr19:53237400-53238600	Active TSS	Fetal Brain Female	brain
37	chr19:53237400-53238600	Active TSS	Left Ventricle	heart
38	chr19:53237400-53238600	Active TSS	Stomach Mucosa	stomach
39	chr19:53237400-53238600	Active TSS	K562	blood
40	chr19:53237400-53238800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr19:53237400-53238800	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr19:53237400-53238800	Active TSS	Brain Substantia Nigra	brain
43	chr19:53237400-53238800	Active TSS	Psoas Muscle	Psoas
44	chr19:53237400-53238800	Active TSS	Thymus	Thymus
45	chr19:53237400-53238800	Active TSS	NH-A	brain
46	chr19:53237400-53239000	Active TSS	Brain Cingulate Gyrus	brain
47	chr19:53237400-53239200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr19:53237400-53239400	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr19:53237400-53239400	Active TSS	Right Atrium	heart
50	chr19:53237600-53238600	Active TSS	iPS-18 Cell Line	embryonic stem cell

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