Variant report

Variant	rs10474475
Chromosome Location	chr5:75752847-75752848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75750071..75753016-chr5:75756588..75758868,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10035095	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10054147	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10058628	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077518	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077639	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10473982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10473983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10474474	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10474476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942781	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11739424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11742542	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11747022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12697851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13153156	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13153602	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13166671	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13184383	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34791684	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4267853	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4333298	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4529172	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56022338	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59969135	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6862109	0.86[EUR][1000 genomes]
rs6877961	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6890308	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6896727	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898214	0.91[ASN][1000 genomes]
rs6899112	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7706384	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7727651	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75722800-75767800	Weak transcription	Ovary	ovary
2	chr5:75742000-75757600	Weak transcription	Lung	lung
3	chr5:75742400-75753000	Weak transcription	Fetal Intestine Small	intestine
4	chr5:75742600-75753800	Weak transcription	Colonic Mucosa	Colon
5	chr5:75743800-75753400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:75745000-75767800	Weak transcription	Fetal Thymus	thymus
7	chr5:75745200-75753400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:75746200-75753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:75746400-75753400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:75746400-75753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:75747000-75753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:75747000-75754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr5:75747200-75753200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
15	chr5:75747400-75753800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:75747400-75753800	Weak transcription	Small Intestine	intestine
17	chr5:75747400-75767800	Weak transcription	Spleen	Spleen
18	chr5:75747600-75753000	Weak transcription	Stomach Mucosa	stomach
19	chr5:75747600-75753200	Weak transcription	Primary T cells from cord blood	blood
20	chr5:75747600-75753200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:75747800-75753800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:75747800-75767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:75748400-75753200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:75748600-75753200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:75749800-75753200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:75749800-75753400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr5:75750000-75754000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr5:75750800-75756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:75751000-75755000	Enhancers	Placenta	Placenta
30	chr5:75751400-75754000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr5:75751400-75754200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr5:75751400-75754200	Enhancers	Liver	Liver
33	chr5:75751400-75755200	Enhancers	HepG2	liver
34	chr5:75751400-75755600	Enhancers	Primary hematopoietic stem cells	blood
35	chr5:75751600-75754200	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr5:75751600-75754400	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr5:75751800-75753400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr5:75751800-75754200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr5:75752000-75753000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:75752000-75753400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:75752200-75753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr5:75752200-75753400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr5:75752200-75753600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr5:75752200-75756000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:75752400-75753400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr5:75752400-75753400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr5:75752400-75753600	Weak transcription	K562	blood
48	chr5:75752600-75753000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr5:75752600-75753000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr5:75752600-75753200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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