Variant report

Variant	rs13153602
Chromosome Location	chr5:75754549-75754550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10035095	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10054147	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10058628	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10077518	1.00[CEU][hapmap];0.93[CHB][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10077639	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10473982	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10473983	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10474474	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10474475	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10474476	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10942781	0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11739424	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11739493	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11742542	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11747022	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12697851	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13153156	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13166671	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13184383	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13187591	0.84[CHB][hapmap]
rs34791684	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4267853	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4333298	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4529172	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56022338	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59969135	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6862109	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6877961	1.00[CEU][hapmap];0.92[CHB][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6890308	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6896727	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6898214	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6899112	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7706384	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727651	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75722800-75767800	Weak transcription	Ovary	ovary
2	chr5:75742000-75757600	Weak transcription	Lung	lung
3	chr5:75745000-75767800	Weak transcription	Fetal Thymus	thymus
4	chr5:75747000-75754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
6	chr5:75747400-75767800	Weak transcription	Spleen	Spleen
7	chr5:75747800-75767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:75750800-75756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:75751000-75755000	Enhancers	Placenta	Placenta
10	chr5:75751400-75755200	Enhancers	HepG2	liver
11	chr5:75751400-75755600	Enhancers	Primary hematopoietic stem cells	blood
12	chr5:75752200-75756000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:75752800-75754800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:75753000-75754600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:75753000-75754600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:75753000-75755400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr5:75753000-75755600	Enhancers	Fetal Intestine Small	intestine
18	chr5:75753000-75759400	Enhancers	Stomach Mucosa	stomach
19	chr5:75753200-75754600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:75753200-75754600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:75753200-75754600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:75753200-75755000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr5:75753200-75755200	Enhancers	Fetal Intestine Large	intestine
24	chr5:75753200-75757200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr5:75753200-75757400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr5:75753400-75754600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr5:75753400-75754600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr5:75753400-75755400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr5:75753600-75754600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:75753800-75755000	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr5:75753800-75755200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr5:75753800-75755400	Enhancers	Pancreas	Pancrea
33	chr5:75753800-75756200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr5:75753800-75756400	Enhancers	Small Intestine	intestine
35	chr5:75753800-75757400	Weak transcription	Primary B cells from cord blood	blood
36	chr5:75753800-75765800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr5:75754000-75755000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr5:75754000-75755200	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr5:75754000-75756000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr5:75754000-75756000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:75754000-75757600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:75754000-75757600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr5:75754000-75759400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr5:75754200-75754600	Flanking Active TSS	Liver	Liver
45	chr5:75754200-75757200	Weak transcription	Primary T cells from cord blood	blood
46	chr5:75754200-75757200	Weak transcription	Colonic Mucosa	Colon
47	chr5:75754200-75757400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr5:75754200-75757400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr5:75754200-75757400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr5:75754200-75757600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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