Variant report

Variant	rs6862109
Chromosome Location	chr5:75772732-75772733
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:118788520..118790631-chr5:75771506..75773655,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186174	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10035095	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs10045155	0.95[JPT][hapmap]
rs10054147	0.89[EUR][1000 genomes]
rs10058628	0.89[EUR][1000 genomes]
rs10077518	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10077639	0.88[EUR][1000 genomes]
rs10473982	0.86[EUR][1000 genomes]
rs10473983	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10474474	0.86[EUR][1000 genomes]
rs10474475	0.86[EUR][1000 genomes]
rs10474476	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10942781	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs11739424	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs11739493	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs11742542	0.91[EUR][1000 genomes]
rs11747022	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs12697851	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs13153156	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs13153602	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs13166671	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs13184383	0.89[EUR][1000 genomes]
rs34791684	0.88[EUR][1000 genomes]
rs4267853	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs4333298	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs4529172	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs56022338	0.88[EUR][1000 genomes]
rs59969135	0.86[EUR][1000 genomes]
rs6877961	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs6890308	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs6896727	0.86[EUR][1000 genomes]
rs6899112	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7706384	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7727651	0.89[EUR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75758200-75775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:75764400-75772800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:75765600-75773600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:75765800-75773000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:75767600-75773200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr5:75767800-75773200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:75768200-75773200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:75768400-75774800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:75768400-75774800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:75768400-75780000	Weak transcription	Esophagus	oesophagus
11	chr5:75769600-75775600	Enhancers	K562	blood
12	chr5:75769600-75816600	Weak transcription	Primary B cells from cord blood	blood
13	chr5:75770000-75775000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:75770000-75775200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:75770000-75777600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:75770000-75779600	Weak transcription	GM12878-XiMat	blood
17	chr5:75770200-75775400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr5:75770400-75774800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr5:75770800-75773400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr5:75771000-75774800	Weak transcription	Colonic Mucosa	Colon
21	chr5:75771000-75775400	Weak transcription	Fetal Thymus	thymus
22	chr5:75771000-75776000	Weak transcription	Primary T cells from cord blood	blood
23	chr5:75771200-75773200	Enhancers	Liver	Liver
24	chr5:75771200-75774400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:75771400-75773000	Weak transcription	Small Intestine	intestine
26	chr5:75771400-75773200	Enhancers	Fetal Intestine Large	intestine
27	chr5:75771400-75773400	Enhancers	Fetal Intestine Small	intestine
28	chr5:75771400-75775800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr5:75771600-75774200	Weak transcription	Gastric	stomach
30	chr5:75771600-75775000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr5:75771600-75775200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr5:75771600-75778000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr5:75771800-75775600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr5:75772000-75774200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr5:75772000-75774400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr5:75772000-75775000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr5:75772200-75774200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:75772200-75774600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:75772200-75774800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr5:75772200-75774800	Weak transcription	Placenta	Placenta
41	chr5:75772200-75775200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr5:75772200-75775200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:75772200-75782200	Enhancers	Stomach Mucosa	stomach
44	chr5:75772400-75774200	Weak transcription	HepG2	liver
45	chr5:75772400-75774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:75772400-75774800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr5:75772400-75775000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr5:75772400-75777800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr5:75772600-75774400	Weak transcription	Pancreas	Pancrea
50	chr5:75772600-75774600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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