Variant report

Variant	rs4267853
Chromosome Location	chr5:75759135-75759136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10035095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038589	0.94[JPT][hapmap]
rs10054147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058628	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10077518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10077639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10473982	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10473983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10474474	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10474475	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10474476	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10942781	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11739424	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11739493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11742542	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11747022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12697851	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13153156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13153602	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13166671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13184383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13187591	0.91[CHB][hapmap]
rs34791684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4333298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4529172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56022338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59969135	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6859984	0.94[JPT][hapmap]
rs6862109	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs6877133	0.94[JPT][hapmap]
rs6877961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6896727	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6898214	1.00[CHB][hapmap];0.82[CHD][hapmap];0.89[ASN][1000 genomes]
rs6899112	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7706384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727651	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75722800-75767800	Weak transcription	Ovary	ovary
2	chr5:75745000-75767800	Weak transcription	Fetal Thymus	thymus
3	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
4	chr5:75747400-75767800	Weak transcription	Spleen	Spleen
5	chr5:75747800-75767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:75753000-75759400	Enhancers	Stomach Mucosa	stomach
7	chr5:75753800-75765800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:75754000-75759400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:75754200-75760600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:75754200-75772000	Weak transcription	Fetal Kidney	kidney
11	chr5:75754400-75765400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:75754400-75768000	Weak transcription	Fetal Lung	lung
13	chr5:75754600-75764400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:75754600-75765800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:75754800-75761200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:75755000-75765400	Weak transcription	Placenta	Placenta
17	chr5:75755000-75766600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:75756400-75766000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr5:75757200-75759400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr5:75757200-75759400	Strong transcription	HepG2	liver
21	chr5:75757200-75760000	Strong transcription	Primary T cells from cord blood	blood
22	chr5:75757200-75760600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:75757200-75761200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:75757400-75759200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:75757400-75759400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr5:75757400-75759600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr5:75757400-75759800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:75757400-75760000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:75757400-75762600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr5:75757400-75762800	Strong transcription	Primary hematopoietic stem cells	blood
31	chr5:75757400-75763400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:75757800-75759400	Enhancers	Duodenum Mucosa	Duodenum
33	chr5:75757800-75762600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr5:75757800-75767800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr5:75758000-75759200	Enhancers	Fetal Intestine Small	intestine
36	chr5:75758000-75759400	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr5:75758000-75767200	Weak transcription	Small Intestine	intestine
38	chr5:75758000-75767800	Weak transcription	Gastric	stomach
39	chr5:75758000-75767800	Weak transcription	Lung	lung
40	chr5:75758000-75769400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr5:75758200-75767800	Weak transcription	Pancreas	Pancrea
42	chr5:75758200-75775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:75758400-75765400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr5:75758400-75765800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr5:75758400-75769200	Weak transcription	Primary B cells from cord blood	blood
46	chr5:75758600-75762200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr5:75758600-75763600	Weak transcription	Liver	Liver
48	chr5:75758800-75762800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr5:75759000-75761800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:75759000-75764200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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