Variant report

Variant	rs10474476
Chromosome Location	chr5:75753324-75753325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10035095	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10054147	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10058628	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077518	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077639	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10473982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10473983	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10474474	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10474475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942781	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11739424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739493	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11742542	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11747022	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12697851	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13153156	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13153602	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13166671	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13184383	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13187591	0.82[CHB][hapmap]
rs34791684	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4267853	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4333298	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4529172	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56022338	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59969135	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6862109	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6877961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6890308	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6896727	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898214	0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6899112	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7706384	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7727651	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75722800-75767800	Weak transcription	Ovary	ovary
2	chr5:75742000-75757600	Weak transcription	Lung	lung
3	chr5:75742600-75753800	Weak transcription	Colonic Mucosa	Colon
4	chr5:75743800-75753400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:75745000-75767800	Weak transcription	Fetal Thymus	thymus
6	chr5:75745200-75753400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:75746200-75753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:75746400-75753400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:75746400-75753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:75747000-75753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:75747000-75754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
13	chr5:75747400-75753800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr5:75747400-75753800	Weak transcription	Small Intestine	intestine
15	chr5:75747400-75767800	Weak transcription	Spleen	Spleen
16	chr5:75747800-75753800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:75747800-75767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:75749800-75753400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr5:75750000-75754000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr5:75750800-75756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:75751000-75755000	Enhancers	Placenta	Placenta
22	chr5:75751400-75754000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr5:75751400-75754200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr5:75751400-75754200	Enhancers	Liver	Liver
25	chr5:75751400-75755200	Enhancers	HepG2	liver
26	chr5:75751400-75755600	Enhancers	Primary hematopoietic stem cells	blood
27	chr5:75751600-75754200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr5:75751600-75754400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr5:75751800-75753400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr5:75751800-75754200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr5:75752000-75753400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:75752200-75753400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr5:75752200-75753600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr5:75752200-75756000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr5:75752400-75753400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr5:75752400-75753400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr5:75752400-75753600	Weak transcription	K562	blood
38	chr5:75752600-75753600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr5:75752800-75753800	Strong transcription	Primary B cells from cord blood	blood
40	chr5:75752800-75754800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr5:75753000-75754600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr5:75753000-75754600	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr5:75753000-75755400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr5:75753000-75755600	Enhancers	Fetal Intestine Small	intestine
45	chr5:75753000-75759400	Enhancers	Stomach Mucosa	stomach
46	chr5:75753200-75754000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr5:75753200-75754000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:75753200-75754000	Enhancers	Duodenum Mucosa	Duodenum
49	chr5:75753200-75754200	Enhancers	Primary T cells from cord blood	blood
50	chr5:75753200-75754200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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