Variant report

Variant	rs13153156
Chromosome Location	chr5:75754251-75754252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10035095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10038589	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs10054147	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10058628	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10077518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10077639	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10473982	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10473983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10474474	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10474475	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10474476	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10942781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739424	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11739493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742542	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11747022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12697851	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13153602	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13166671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13184383	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13187591	0.90[CHB][hapmap]
rs34791684	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4267853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4333298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4529172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56022338	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59969135	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859984	0.86[JPT][hapmap]
rs6862109	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6877133	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs6877961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6890308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6896727	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6898214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6899112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7706384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7727651	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75722800-75767800	Weak transcription	Ovary	ovary
2	chr5:75742000-75757600	Weak transcription	Lung	lung
3	chr5:75745000-75767800	Weak transcription	Fetal Thymus	thymus
4	chr5:75747000-75754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
6	chr5:75747400-75767800	Weak transcription	Spleen	Spleen
7	chr5:75747800-75767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:75750800-75756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:75751000-75755000	Enhancers	Placenta	Placenta
10	chr5:75751400-75755200	Enhancers	HepG2	liver
11	chr5:75751400-75755600	Enhancers	Primary hematopoietic stem cells	blood
12	chr5:75751600-75754400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr5:75752200-75756000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:75752800-75754800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:75753000-75754600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:75753000-75754600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr5:75753000-75755400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr5:75753000-75755600	Enhancers	Fetal Intestine Small	intestine
19	chr5:75753000-75759400	Enhancers	Stomach Mucosa	stomach
20	chr5:75753200-75754400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr5:75753200-75754600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:75753200-75754600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:75753200-75754600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:75753200-75755000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:75753200-75755200	Enhancers	Fetal Intestine Large	intestine
26	chr5:75753200-75757200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr5:75753200-75757400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:75753400-75754400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr5:75753400-75754400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr5:75753400-75754600	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr5:75753400-75754600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr5:75753400-75755400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr5:75753600-75754400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr5:75753600-75754400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr5:75753600-75754400	Enhancers	Fetal Lung	lung
36	chr5:75753600-75754400	Enhancers	K562	blood
37	chr5:75753600-75754600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr5:75753800-75755000	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr5:75753800-75755200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr5:75753800-75755400	Enhancers	Pancreas	Pancrea
41	chr5:75753800-75756200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:75753800-75756400	Enhancers	Small Intestine	intestine
43	chr5:75753800-75757400	Weak transcription	Primary B cells from cord blood	blood
44	chr5:75753800-75765800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr5:75754000-75754400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:75754000-75755000	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr5:75754000-75755200	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr5:75754000-75756000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr5:75754000-75756000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr5:75754000-75757600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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