Variant report

Variant	rs12697851
Chromosome Location	chr5:75752518-75752519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75750071..75753016-chr5:75756588..75758868,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10035095	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10054147	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10058628	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077518	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077639	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10473982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10473983	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10474474	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10474475	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10474476	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942781	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11739424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739493	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11742542	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11747022	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13153156	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13153602	0.89[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13166671	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13184383	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13187591	0.82[CHB][hapmap]
rs34791684	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4267853	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4333298	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4529172	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56022338	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59969135	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6862109	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6877961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6890308	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6896727	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898214	0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6899112	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7706384	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7727651	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75722800-75767800	Weak transcription	Ovary	ovary
2	chr5:75742000-75757600	Weak transcription	Lung	lung
3	chr5:75742400-75753000	Weak transcription	Fetal Intestine Small	intestine
4	chr5:75742600-75753800	Weak transcription	Colonic Mucosa	Colon
5	chr5:75743800-75753400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:75745000-75767800	Weak transcription	Fetal Thymus	thymus
7	chr5:75745200-75753400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:75745600-75752800	Weak transcription	Primary B cells from cord blood	blood
9	chr5:75746200-75753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:75746400-75753400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:75746400-75753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:75747000-75753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:75747000-75754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:75747200-75753200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
16	chr5:75747400-75752600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:75747400-75753800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:75747400-75753800	Weak transcription	Small Intestine	intestine
19	chr5:75747400-75767800	Weak transcription	Spleen	Spleen
20	chr5:75747600-75753000	Weak transcription	Stomach Mucosa	stomach
21	chr5:75747600-75753200	Weak transcription	Primary T cells from cord blood	blood
22	chr5:75747600-75753200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr5:75747800-75752800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr5:75747800-75753800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:75747800-75767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr5:75748400-75753200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:75748600-75752600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:75748600-75753200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr5:75749800-75753200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:75749800-75753400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr5:75750000-75754000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr5:75750800-75756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:75751000-75755000	Enhancers	Placenta	Placenta
34	chr5:75751200-75752800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:75751400-75754000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr5:75751400-75754200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr5:75751400-75754200	Enhancers	Liver	Liver
38	chr5:75751400-75755200	Enhancers	HepG2	liver
39	chr5:75751400-75755600	Enhancers	Primary hematopoietic stem cells	blood
40	chr5:75751600-75754200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr5:75751600-75754400	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr5:75751800-75753400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr5:75751800-75754200	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr5:75752000-75752600	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr5:75752000-75753000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr5:75752000-75753400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:75752200-75752800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr5:75752200-75753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr5:75752200-75753400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr5:75752200-75753600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links