Variant report

Variant	rs13184383
Chromosome Location	chr5:75768081-75768082
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10035095	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10054147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10058628	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10077518	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10077639	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10473982	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10473983	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10474474	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10474475	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10474476	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10942781	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11739424	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11739493	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11742542	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747022	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12697851	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13153156	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13153602	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13166671	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34791684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4267853	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4333298	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4529172	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56022338	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59969135	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6862109	0.89[EUR][1000 genomes]
rs6877961	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6890308	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6896727	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6898214	0.87[ASN][1000 genomes]
rs6899112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706384	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7727651	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
2	chr5:75754200-75772000	Weak transcription	Fetal Kidney	kidney
3	chr5:75758000-75769400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:75758200-75775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:75758400-75769200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:75759200-75771400	Weak transcription	Fetal Intestine Small	intestine
7	chr5:75762800-75772600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:75764400-75768600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr5:75764400-75772800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:75765400-75772600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr5:75765600-75769000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr5:75765600-75773600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:75765800-75769400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr5:75765800-75772000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr5:75765800-75773000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:75766000-75769200	Weak transcription	GM12878-XiMat	blood
17	chr5:75766000-75771200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:75766000-75772200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:75766200-75771200	Enhancers	Stomach Mucosa	stomach
20	chr5:75766200-75772200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr5:75766800-75770200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:75766800-75771000	Enhancers	Primary T cells from cord blood	blood
23	chr5:75767000-75768600	Enhancers	Duodenum Mucosa	Duodenum
24	chr5:75767200-75768400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:75767200-75768400	Enhancers	Small Intestine	intestine
26	chr5:75767200-75769800	Enhancers	A549	lung
27	chr5:75767200-75770000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr5:75767400-75769600	Weak transcription	K562	blood
29	chr5:75767400-75771000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:75767600-75768400	Enhancers	Fetal Brain Female	brain
31	chr5:75767600-75768800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr5:75767600-75769000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr5:75767600-75771200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr5:75767600-75773200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr5:75767800-75768200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:75767800-75768200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:75767800-75768200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:75767800-75768200	Enhancers	Gastric	stomach
39	chr5:75767800-75768200	Enhancers	Ovary	ovary
40	chr5:75767800-75768200	Enhancers	Spleen	Spleen
41	chr5:75767800-75768400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr5:75767800-75768400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr5:75767800-75768400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr5:75767800-75768400	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr5:75767800-75768400	Enhancers	Colonic Mucosa	Colon
46	chr5:75767800-75768400	Enhancers	Esophagus	oesophagus
47	chr5:75767800-75768400	Enhancers	Placenta	Placenta
48	chr5:75767800-75768400	Enhancers	Lung	lung
49	chr5:75767800-75768800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr5:75767800-75768800	Enhancers	Sigmoid Colon	Sigmoid Colon

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