Variant report

Variant	rs10751212
Chromosome Location	chr11:72507300-72507301
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72487526..72509577-chr11:72522325..72536312,93	MCF-7	breast:
2	chr11:72503176..72507418-chr11:72523751..72527635,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168010	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025411	1.00[AFR][1000 genomes]
rs10736789	1.00[AFR][1000 genomes]
rs10751220	1.00[AFR][1000 genomes]
rs10751221	1.00[AFR][1000 genomes]
rs10898882	1.00[AFR][1000 genomes]
rs11235602	1.00[AFR][1000 genomes]
rs12278657	1.00[AFR][1000 genomes]
rs1367698	1.00[AFR][1000 genomes]
rs1681501	1.00[AFR][1000 genomes]
rs1785219	1.00[AFR][1000 genomes]
rs1808621	1.00[AFR][1000 genomes]
rs1982038	1.00[AFR][1000 genomes]
rs2043156	1.00[AFR][1000 genomes]
rs2116235	1.00[AFR][1000 genomes]
rs2365906	1.00[AFR][1000 genomes]
rs2365908	1.00[AFR][1000 genomes]
rs2365909	1.00[AFR][1000 genomes]
rs3862793	1.00[AFR][1000 genomes]
rs3862795	1.00[AFR][1000 genomes]
rs3903492	1.00[AFR][1000 genomes]
rs4329714	1.00[AFR][1000 genomes]
rs4373969	1.00[AFR][1000 genomes]
rs4594026	1.00[AFR][1000 genomes]
rs4643105	1.00[AFR][1000 genomes]
rs479093	1.00[AFR][1000 genomes]
rs4944015	1.00[AFR][1000 genomes]
rs4944017	1.00[AFR][1000 genomes]
rs494413	1.00[AFR][1000 genomes]
rs4944812	1.00[AFR][1000 genomes]
rs4944817	1.00[AFR][1000 genomes]
rs4944818	1.00[AFR][1000 genomes]
rs537980	1.00[AFR][1000 genomes]
rs560258	1.00[AFR][1000 genomes]
rs560857	1.00[AFR][1000 genomes]
rs593301	1.00[AFR][1000 genomes]
rs640283	1.00[AFR][1000 genomes]
rs658164	1.00[AFR][1000 genomes]
rs6592488	1.00[AFR][1000 genomes]
rs6592492	1.00[AFR][1000 genomes]
rs6592493	1.00[AFR][1000 genomes]
rs6592499	1.00[AFR][1000 genomes]
rs6592501	1.00[AFR][1000 genomes]
rs671766	1.00[AFR][1000 genomes]
rs7101936	1.00[AFR][1000 genomes]
rs7115321	1.00[AFR][1000 genomes]
rs7122570	1.00[AFR][1000 genomes]
rs7129851	1.00[AFR][1000 genomes]
rs7931372	1.00[AFR][1000 genomes]
rs7937866	1.00[AFR][1000 genomes]
rs7945119	1.00[AFR][1000 genomes]
rs7947513	1.00[AFR][1000 genomes]
rs7948244	1.00[AFR][1000 genomes]
rs7950432	1.00[AFR][1000 genomes]
rs919600	1.00[AFR][1000 genomes]
rs9795303	1.00[AFR][1000 genomes]
rs994305	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv825992	chr11:72476174-72524295	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72505200-72508800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:72505200-72509000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:72505200-72509000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:72505200-72509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:72505200-72509400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:72505400-72509000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:72505400-72509000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:72505600-72509000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:72505600-72509200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:72505600-72509200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:72505600-72523600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:72505800-72509000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:72505800-72509000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:72505800-72509000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:72505800-72519200	Weak transcription	GM12878-XiMat	blood
16	chr11:72505800-72519400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:72505800-72519800	Weak transcription	Fetal Intestine Small	intestine
18	chr11:72505800-72520200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:72505800-72523000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:72505800-72523600	Weak transcription	Stomach Mucosa	stomach
21	chr11:72506000-72508000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:72506000-72508800	Weak transcription	Adipose Nuclei	Adipose
23	chr11:72506000-72509400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:72506000-72509400	Weak transcription	A549	lung
25	chr11:72506000-72509800	Weak transcription	Brain Germinal Matrix	brain
26	chr11:72506000-72516400	Weak transcription	Primary B cells from cord blood	blood
27	chr11:72506000-72518800	Weak transcription	Fetal Stomach	stomach
28	chr11:72506000-72519400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:72506000-72519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:72506000-72519400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:72506000-72519400	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:72506000-72519600	Weak transcription	HMEC	breast
33	chr11:72506000-72520000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:72506000-72520200	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:72506000-72521800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:72506000-72522800	Weak transcription	Pancreas	Pancrea
37	chr11:72506000-72523200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:72506000-72523600	Weak transcription	Brain Angular Gyrus	brain
39	chr11:72506000-72523800	Weak transcription	Spleen	Spleen
40	chr11:72506200-72509000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:72506200-72509000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:72506200-72519400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:72506200-72523800	Weak transcription	Brain Anterior Caudate	brain
44	chr11:72506600-72509000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:72506600-72509000	Weak transcription	K562	blood
46	chr11:72506600-72509400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:72506600-72518400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:72506600-72519200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:72506600-72519200	Weak transcription	Placenta	Placenta
50	chr11:72506600-72519400	Weak transcription	NH-A	brain

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