Variant report

Variant	rs11235602
Chromosome Location	chr11:72531472-72531473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72451237..72453467-chr11:72528807..72531708,2	K562	blood:
2	chr11:72390946..72393095-chr11:72530175..72532739,2	K562	blood:
3	chr11:72487526..72509577-chr11:72522325..72536312,93	MCF-7	breast:
4	chr11:72529034..72531473-chr11:72868696..72870961,2	K562	blood:
5	chr11:72490888..72493672-chr11:72531359..72534461,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265064	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000186635	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025411	1.00[AFR][1000 genomes]
rs10736789	1.00[AFR][1000 genomes]
rs10751212	1.00[AFR][1000 genomes]
rs10751220	1.00[AFR][1000 genomes]
rs10751221	1.00[AFR][1000 genomes]
rs10898882	1.00[AFR][1000 genomes]
rs12278657	1.00[AFR][1000 genomes]
rs1367698	1.00[AFR][1000 genomes]
rs1681501	1.00[AFR][1000 genomes]
rs1785219	1.00[AFR][1000 genomes]
rs1808621	1.00[AFR][1000 genomes]
rs1982038	1.00[AFR][1000 genomes]
rs2043156	1.00[AFR][1000 genomes]
rs2116235	1.00[AFR][1000 genomes]
rs2365906	1.00[AFR][1000 genomes]
rs2365908	1.00[AFR][1000 genomes]
rs2365909	1.00[AFR][1000 genomes]
rs3862793	1.00[AFR][1000 genomes]
rs3862795	1.00[AFR][1000 genomes]
rs3903492	1.00[AFR][1000 genomes]
rs4329714	1.00[AFR][1000 genomes]
rs4373969	1.00[AFR][1000 genomes]
rs4594026	1.00[AFR][1000 genomes]
rs4643105	1.00[AFR][1000 genomes]
rs479093	1.00[AFR][1000 genomes]
rs4944015	1.00[AFR][1000 genomes]
rs4944017	1.00[AFR][1000 genomes]
rs494413	1.00[AFR][1000 genomes]
rs4944812	1.00[AFR][1000 genomes]
rs4944817	1.00[AFR][1000 genomes]
rs4944818	1.00[AFR][1000 genomes]
rs537980	1.00[AFR][1000 genomes]
rs560258	1.00[AFR][1000 genomes]
rs560857	1.00[AFR][1000 genomes]
rs593301	1.00[AFR][1000 genomes]
rs640283	1.00[AFR][1000 genomes]
rs658164	1.00[AFR][1000 genomes]
rs6592488	1.00[AFR][1000 genomes]
rs6592492	1.00[AFR][1000 genomes]
rs6592493	1.00[AFR][1000 genomes]
rs6592499	1.00[AFR][1000 genomes]
rs6592501	1.00[AFR][1000 genomes]
rs671766	1.00[AFR][1000 genomes]
rs7101936	1.00[AFR][1000 genomes]
rs7115321	1.00[AFR][1000 genomes]
rs7122570	1.00[AFR][1000 genomes]
rs7129851	1.00[AFR][1000 genomes]
rs7931372	1.00[AFR][1000 genomes]
rs7937866	1.00[AFR][1000 genomes]
rs7945119	1.00[AFR][1000 genomes]
rs7947513	1.00[AFR][1000 genomes]
rs7948244	1.00[AFR][1000 genomes]
rs7950432	1.00[AFR][1000 genomes]
rs919600	1.00[AFR][1000 genomes]
rs9795303	1.00[AFR][1000 genomes]
rs994305	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72526200-72532800	Weak transcription	Aorta	Aorta
2	chr11:72526400-72531600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:72526400-72531600	Weak transcription	Fetal Brain Female	brain
4	chr11:72526400-72532800	Weak transcription	Fetal Kidney	kidney
5	chr11:72526600-72532000	Weak transcription	Fetal Brain Male	brain
6	chr11:72526600-72532200	Weak transcription	A549	lung
7	chr11:72526600-72532400	Weak transcription	Psoas Muscle	Psoas
8	chr11:72526600-72532600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:72526800-72532000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:72526800-72532000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:72526800-72532400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:72527000-72531600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:72527000-72532000	Weak transcription	Brain Germinal Matrix	brain
14	chr11:72527000-72532000	Weak transcription	Right Atrium	heart
15	chr11:72527000-72532200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:72527000-72532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:72527000-72532200	Weak transcription	Small Intestine	intestine
18	chr11:72527000-72532200	Weak transcription	Hela-S3	cervix
19	chr11:72527000-72532400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:72527600-72531600	Weak transcription	Fetal Heart	heart
21	chr11:72527600-72531600	Weak transcription	Pancreas	Pancrea
22	chr11:72527600-72531800	Strong transcription	Fetal Intestine Small	intestine
23	chr11:72527600-72532200	Weak transcription	NHDF-Ad	bronchial
24	chr11:72527600-72532600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:72527800-72531800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:72527800-72531800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:72527800-72531800	Weak transcription	Left Ventricle	heart
28	chr11:72527800-72531800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:72527800-72531800	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:72527800-72532000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:72527800-72532000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:72527800-72532000	Weak transcription	Stomach Mucosa	stomach
33	chr11:72527800-72532200	Weak transcription	NH-A	brain
34	chr11:72527800-72532200	Weak transcription	Osteobl	bone
35	chr11:72527800-72532400	Weak transcription	Brain Substantia Nigra	brain
36	chr11:72527800-72532800	Weak transcription	HSMMtube	muscle
37	chr11:72528000-72531600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:72528000-72531800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:72528000-72531800	Strong transcription	Fetal Muscle Leg	muscle
40	chr11:72528000-72531800	Strong transcription	Fetal Stomach	stomach
41	chr11:72528000-72531800	Strong transcription	Fetal Thymus	thymus
42	chr11:72528000-72532400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:72528000-72532600	Weak transcription	HSMM	muscle
44	chr11:72528200-72531600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr11:72528200-72532000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:72528400-72531600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:72528600-72531600	Strong transcription	Colonic Mucosa	Colon
48	chr11:72528600-72531600	Strong transcription	Fetal Intestine Large	intestine
49	chr11:72528600-72531800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:72528800-72531800	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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