Variant report

Variant	rs1808621
Chromosome Location	chr11:72528409-72528410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72487526..72509577-chr11:72522325..72536312,93	MCF-7	breast:
2	chr11:72526278..72528478-chr11:72852070..72855087,3	K562	blood:
3	chr11:72525940..72528822-chr11:72928585..72931110,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction
ENSG00000186635	Chromatin interaction
ENSG00000265064	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000175591	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025411	1.00[AFR][1000 genomes]
rs10736789	1.00[AFR][1000 genomes]
rs10751212	1.00[AFR][1000 genomes]
rs10751220	1.00[AFR][1000 genomes]
rs10751221	1.00[AFR][1000 genomes]
rs10898882	1.00[AFR][1000 genomes]
rs11235602	1.00[AFR][1000 genomes]
rs12278657	1.00[AFR][1000 genomes]
rs1367698	1.00[AFR][1000 genomes]
rs1681501	1.00[AFR][1000 genomes]
rs1785219	1.00[AFR][1000 genomes]
rs1982038	1.00[AFR][1000 genomes]
rs2043156	1.00[AFR][1000 genomes]
rs2116235	1.00[AFR][1000 genomes]
rs2365906	1.00[AFR][1000 genomes]
rs2365908	1.00[AFR][1000 genomes]
rs2365909	1.00[AFR][1000 genomes]
rs3862793	1.00[AFR][1000 genomes]
rs3862795	1.00[AFR][1000 genomes]
rs3903492	1.00[AFR][1000 genomes]
rs4329714	1.00[AFR][1000 genomes]
rs4373969	1.00[AFR][1000 genomes]
rs4594026	1.00[AFR][1000 genomes]
rs4643105	1.00[AFR][1000 genomes]
rs479093	1.00[AFR][1000 genomes]
rs4944015	1.00[AFR][1000 genomes]
rs4944017	1.00[AFR][1000 genomes]
rs494413	1.00[AFR][1000 genomes]
rs4944812	1.00[AFR][1000 genomes]
rs4944817	1.00[AFR][1000 genomes]
rs4944818	1.00[AFR][1000 genomes]
rs537980	1.00[AFR][1000 genomes]
rs560258	1.00[AFR][1000 genomes]
rs560857	1.00[AFR][1000 genomes]
rs593301	1.00[AFR][1000 genomes]
rs640283	1.00[AFR][1000 genomes]
rs658164	1.00[AFR][1000 genomes]
rs6592488	1.00[AFR][1000 genomes]
rs6592492	1.00[AFR][1000 genomes]
rs6592493	1.00[AFR][1000 genomes]
rs6592499	1.00[AFR][1000 genomes]
rs6592501	1.00[AFR][1000 genomes]
rs671766	1.00[AFR][1000 genomes]
rs7101936	1.00[AFR][1000 genomes]
rs7115321	1.00[AFR][1000 genomes]
rs7122570	1.00[AFR][1000 genomes]
rs7129851	1.00[AFR][1000 genomes]
rs7931372	1.00[AFR][1000 genomes]
rs7937866	1.00[AFR][1000 genomes]
rs7945119	1.00[AFR][1000 genomes]
rs7947513	1.00[AFR][1000 genomes]
rs7948244	1.00[AFR][1000 genomes]
rs7950432	1.00[AFR][1000 genomes]
rs919600	1.00[AFR][1000 genomes]
rs9795303	1.00[AFR][1000 genomes]
rs994305	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72526200-72532800	Weak transcription	Aorta	Aorta
2	chr11:72526400-72529000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:72526400-72529000	Weak transcription	Gastric	stomach
4	chr11:72526400-72531600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:72526400-72531600	Weak transcription	Fetal Brain Female	brain
6	chr11:72526400-72532800	Weak transcription	Fetal Kidney	kidney
7	chr11:72526600-72528800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:72526600-72528800	Weak transcription	Ovary	ovary
9	chr11:72526600-72532000	Weak transcription	Fetal Brain Male	brain
10	chr11:72526600-72532200	Weak transcription	A549	lung
11	chr11:72526600-72532400	Weak transcription	Psoas Muscle	Psoas
12	chr11:72526600-72532600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:72526800-72528600	Weak transcription	Fetal Intestine Large	intestine
14	chr11:72526800-72530200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:72526800-72532000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:72526800-72532000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:72526800-72532400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:72527000-72528600	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:72527000-72528600	Weak transcription	HepG2	liver
20	chr11:72527000-72528600	Weak transcription	NHEK	skin
21	chr11:72527000-72528800	Weak transcription	HMEC	breast
22	chr11:72527000-72529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:72527000-72531600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:72527000-72532000	Weak transcription	Brain Germinal Matrix	brain
25	chr11:72527000-72532000	Weak transcription	Right Atrium	heart
26	chr11:72527000-72532200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:72527000-72532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:72527000-72532200	Weak transcription	Small Intestine	intestine
29	chr11:72527000-72532200	Weak transcription	Hela-S3	cervix
30	chr11:72527000-72532400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:72527400-72529000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:72527400-72529200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:72527400-72529200	Genic enhancers	Spleen	Spleen
34	chr11:72527600-72528800	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
35	chr11:72527600-72528800	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:72527600-72528800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:72527600-72528800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:72527600-72528800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:72527600-72528800	Weak transcription	Thymus	Thymus
40	chr11:72527600-72529200	Weak transcription	Fetal Lung	lung
41	chr11:72527600-72529600	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr11:72527600-72531600	Weak transcription	Fetal Heart	heart
43	chr11:72527600-72531600	Weak transcription	Pancreas	Pancrea
44	chr11:72527600-72531800	Strong transcription	Fetal Intestine Small	intestine
45	chr11:72527600-72532200	Weak transcription	NHDF-Ad	bronchial
46	chr11:72527600-72532600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:72527800-72528600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:72527800-72528600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:72527800-72528600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:72527800-72528600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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