Variant report

Variant	rs7947513
Chromosome Location	chr11:72764307-72764308
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025411	1.00[AFR][1000 genomes]
rs10736789	1.00[AFR][1000 genomes]
rs10751212	1.00[AFR][1000 genomes]
rs10751220	1.00[AFR][1000 genomes]
rs10751221	1.00[AFR][1000 genomes]
rs10898882	1.00[AFR][1000 genomes]
rs11235602	1.00[AFR][1000 genomes]
rs12278657	1.00[AFR][1000 genomes]
rs1367698	1.00[AFR][1000 genomes]
rs1681501	1.00[AFR][1000 genomes]
rs1785219	1.00[AFR][1000 genomes]
rs1808621	1.00[AFR][1000 genomes]
rs1982038	1.00[AFR][1000 genomes]
rs2043156	1.00[AFR][1000 genomes]
rs2116235	1.00[AFR][1000 genomes]
rs2365906	1.00[AFR][1000 genomes]
rs2365908	1.00[AFR][1000 genomes]
rs2365909	1.00[AFR][1000 genomes]
rs3862793	1.00[AFR][1000 genomes]
rs3862795	1.00[AFR][1000 genomes]
rs3903492	1.00[AFR][1000 genomes]
rs4329714	1.00[AFR][1000 genomes]
rs4373969	1.00[AFR][1000 genomes]
rs4594026	1.00[AFR][1000 genomes]
rs4643105	1.00[AFR][1000 genomes]
rs479093	1.00[AFR][1000 genomes]
rs4944015	1.00[AFR][1000 genomes]
rs4944017	1.00[AFR][1000 genomes]
rs494413	1.00[AFR][1000 genomes]
rs4944812	1.00[AFR][1000 genomes]
rs4944817	1.00[AFR][1000 genomes]
rs4944818	1.00[AFR][1000 genomes]
rs537980	1.00[AFR][1000 genomes]
rs560258	1.00[AFR][1000 genomes]
rs560857	1.00[AFR][1000 genomes]
rs593301	1.00[AFR][1000 genomes]
rs640283	1.00[AFR][1000 genomes]
rs658164	1.00[AFR][1000 genomes]
rs6592488	1.00[AFR][1000 genomes]
rs6592492	1.00[AFR][1000 genomes]
rs6592493	1.00[AFR][1000 genomes]
rs6592499	1.00[AFR][1000 genomes]
rs6592501	1.00[AFR][1000 genomes]
rs671766	1.00[AFR][1000 genomes]
rs7101936	1.00[AFR][1000 genomes]
rs7115321	1.00[AFR][1000 genomes]
rs7122570	1.00[AFR][1000 genomes]
rs7129851	1.00[AFR][1000 genomes]
rs7931372	1.00[AFR][1000 genomes]
rs7937866	1.00[AFR][1000 genomes]
rs7945119	1.00[AFR][1000 genomes]
rs7948244	1.00[AFR][1000 genomes]
rs7950432	1.00[AFR][1000 genomes]
rs919600	1.00[AFR][1000 genomes]
rs9795303	1.00[AFR][1000 genomes]
rs994305	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72739400-72765800	Weak transcription	Spleen	Spleen
2	chr11:72740000-72771800	Weak transcription	Fetal Stomach	stomach
3	chr11:72741400-72765000	Weak transcription	Fetal Heart	heart
4	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
5	chr11:72750600-72765800	Weak transcription	Ovary	ovary
6	chr11:72758400-72773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:72759400-72765800	Weak transcription	HepG2	liver
8	chr11:72759400-72772000	Weak transcription	Fetal Intestine Small	intestine
9	chr11:72759600-72771000	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:72759600-72771000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:72759800-72765000	Weak transcription	Fetal Lung	lung
12	chr11:72759800-72765600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:72759800-72765800	Weak transcription	Left Ventricle	heart
14	chr11:72759800-72765800	Weak transcription	Small Intestine	intestine
15	chr11:72759800-72771400	Weak transcription	HUVEC	blood vessel
16	chr11:72759800-72771600	Weak transcription	Fetal Thymus	thymus
17	chr11:72759800-72771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:72759800-72772000	Weak transcription	Aorta	Aorta
19	chr11:72759800-72772000	Weak transcription	Pancreas	Pancrea
20	chr11:72759800-72772200	Weak transcription	Brain Substantia Nigra	brain
21	chr11:72759800-72788400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:72760000-72768200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:72760000-72772000	Weak transcription	Primary T cells from cord blood	blood
24	chr11:72760000-72772200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:72760200-72765000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:72760400-72765800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:72761400-72768400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:72761400-72774600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:72761800-72766000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr11:72762000-72771800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr11:72762400-72783600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:72763200-72764600	Weak transcription	Brain Anterior Caudate	brain
33	chr11:72763600-72765800	Weak transcription	Primary B cells from cord blood	blood
34	chr11:72764000-72765000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr11:72764000-72765000	Weak transcription	GM12878-XiMat	blood
36	chr11:72764200-72824600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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