Variant report

Variant	rs10898882
Chromosome Location	chr11:72538944-72538945
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72538676..72541383-chr11:72904496..72907211,2	MCF-7	breast:
2	chr11:72534107..72536304-chr11:72538000..72539658,2	K562	blood:
3	chr11:72536642..72539499-chr11:72952238..72954950,2	K562	blood:
4	chr11:72529288..72531257-chr11:72537925..72540792,2	K562	blood:
5	chr11:72531953..72533844-chr11:72537907..72539581,2	K562	blood:

Variant related genes	Relation type
ENSG00000168010	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025411	1.00[AFR][1000 genomes]
rs10736789	1.00[AFR][1000 genomes]
rs10751212	1.00[AFR][1000 genomes]
rs10751220	1.00[AFR][1000 genomes]
rs10751221	1.00[AFR][1000 genomes]
rs11235602	1.00[AFR][1000 genomes]
rs12278657	1.00[AFR][1000 genomes]
rs1367698	1.00[AFR][1000 genomes]
rs1681501	1.00[AFR][1000 genomes]
rs1785219	1.00[AFR][1000 genomes]
rs1808621	1.00[AFR][1000 genomes]
rs1982038	1.00[AFR][1000 genomes]
rs2043156	1.00[AFR][1000 genomes]
rs2116235	1.00[AFR][1000 genomes]
rs2365906	1.00[AFR][1000 genomes]
rs2365908	1.00[AFR][1000 genomes]
rs2365909	1.00[AFR][1000 genomes]
rs3862793	1.00[AFR][1000 genomes]
rs3862795	1.00[AFR][1000 genomes]
rs3903492	1.00[AFR][1000 genomes]
rs4329714	1.00[AFR][1000 genomes]
rs4373969	1.00[AFR][1000 genomes]
rs4594026	1.00[AFR][1000 genomes]
rs4643105	1.00[AFR][1000 genomes]
rs479093	1.00[AFR][1000 genomes]
rs4944015	1.00[AFR][1000 genomes]
rs4944017	1.00[AFR][1000 genomes]
rs494413	1.00[AFR][1000 genomes]
rs4944812	1.00[AFR][1000 genomes]
rs4944817	1.00[AFR][1000 genomes]
rs4944818	1.00[AFR][1000 genomes]
rs537980	1.00[AFR][1000 genomes]
rs560258	1.00[AFR][1000 genomes]
rs560857	1.00[AFR][1000 genomes]
rs593301	1.00[AFR][1000 genomes]
rs640283	1.00[AFR][1000 genomes]
rs658164	1.00[AFR][1000 genomes]
rs6592488	1.00[AFR][1000 genomes]
rs6592492	1.00[AFR][1000 genomes]
rs6592493	1.00[AFR][1000 genomes]
rs6592499	1.00[AFR][1000 genomes]
rs6592501	1.00[AFR][1000 genomes]
rs671766	1.00[AFR][1000 genomes]
rs7101936	1.00[AFR][1000 genomes]
rs7115321	1.00[AFR][1000 genomes]
rs7122570	1.00[AFR][1000 genomes]
rs7129851	1.00[AFR][1000 genomes]
rs7931372	1.00[AFR][1000 genomes]
rs7937866	1.00[AFR][1000 genomes]
rs7945119	1.00[AFR][1000 genomes]
rs7947513	1.00[AFR][1000 genomes]
rs7948244	1.00[AFR][1000 genomes]
rs7950432	1.00[AFR][1000 genomes]
rs919600	1.00[AFR][1000 genomes]
rs9795303	1.00[AFR][1000 genomes]
rs994305	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72528800-72542800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:72529000-72543600	Strong transcription	Dnd41	blood
3	chr11:72532600-72542400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr11:72533200-72541400	Weak transcription	HSMMtube	muscle
5	chr11:72533600-72539000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:72533600-72539000	Weak transcription	Liver	Liver
7	chr11:72533600-72539200	Weak transcription	Left Ventricle	heart
8	chr11:72533600-72539200	Weak transcription	Ovary	ovary
9	chr11:72533600-72539400	Weak transcription	Gastric	stomach
10	chr11:72533600-72542200	Weak transcription	NHEK	skin
11	chr11:72533600-72542400	Weak transcription	Fetal Lung	lung
12	chr11:72533600-72542600	Weak transcription	Stomach Mucosa	stomach
13	chr11:72533600-72542800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:72533600-72542800	Weak transcription	Hela-S3	cervix
15	chr11:72533800-72539000	Weak transcription	NHLF	lung
16	chr11:72533800-72539200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:72533800-72539200	Weak transcription	Colonic Mucosa	Colon
18	chr11:72533800-72539200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:72533800-72539400	Weak transcription	Aorta	Aorta
20	chr11:72533800-72539400	Weak transcription	Pancreas	Pancrea
21	chr11:72533800-72539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:72533800-72539600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:72533800-72541000	Strong transcription	Primary hematopoietic stem cells	blood
24	chr11:72533800-72542000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:72533800-72542400	Weak transcription	Brain Angular Gyrus	brain
26	chr11:72533800-72542600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:72533800-72542600	Weak transcription	Brain Substantia Nigra	brain
28	chr11:72533800-72542600	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:72533800-72542600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:72533800-72542600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:72533800-72542600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:72533800-72542600	Weak transcription	HMEC	breast
33	chr11:72533800-72549400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:72534000-72539000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:72534000-72539000	Weak transcription	Osteobl	bone
36	chr11:72534000-72539400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:72534000-72539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:72534000-72539400	Weak transcription	Brain Germinal Matrix	brain
39	chr11:72534000-72539600	Weak transcription	Brain Anterior Caudate	brain
40	chr11:72534000-72540200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:72534000-72541000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:72534000-72541800	Strong transcription	Thymus	Thymus
43	chr11:72534000-72542000	Strong transcription	Esophagus	oesophagus
44	chr11:72534000-72542400	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:72534000-72542600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:72534000-72542600	Weak transcription	A549	lung
47	chr11:72534000-72542800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:72534000-72543200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:72534000-72549200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr11:72534200-72539000	Weak transcription	Primary B cells from cord blood	blood

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