Variant report

Variant	rs6592492
Chromosome Location	chr11:72548596-72548597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72547760..72550663-chr11:72556425..72558728,2	MCF-7	breast:
2	chr11:72541766..72544288-chr11:72546935..72549671,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1025411	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10736787	1.00[YRI][hapmap]
rs10736789	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10751212	1.00[AFR][1000 genomes]
rs10751220	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10751221	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10751223	1.00[YRI][hapmap]
rs10898882	1.00[AFR][1000 genomes]
rs11235602	1.00[AFR][1000 genomes]
rs12278657	1.00[AFR][1000 genomes]
rs1367698	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1681501	1.00[AFR][1000 genomes]
rs1785219	1.00[AFR][1000 genomes]
rs1808621	1.00[AFR][1000 genomes]
rs1982038	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2043156	1.00[AFR][1000 genomes]
rs2116235	1.00[AFR][1000 genomes]
rs2365906	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2365907	1.00[YRI][hapmap]
rs2365908	1.00[AFR][1000 genomes]
rs2365909	1.00[AFR][1000 genomes]
rs3862793	1.00[AFR][1000 genomes]
rs3862795	1.00[AFR][1000 genomes]
rs3903492	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4329714	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4373969	1.00[AFR][1000 genomes]
rs4594026	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4643105	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs479093	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4944015	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4944017	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs494413	1.00[AFR][1000 genomes]
rs4944799	1.00[YRI][hapmap]
rs4944812	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4944817	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4944818	1.00[AFR][1000 genomes]
rs537980	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs560258	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs560857	1.00[AFR][1000 genomes]
rs593301	1.00[AFR][1000 genomes]
rs640283	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs658164	1.00[AFR][1000 genomes]
rs6592488	1.00[AFR][1000 genomes]
rs6592493	1.00[AFR][1000 genomes]
rs6592499	1.00[AFR][1000 genomes]
rs6592501	1.00[AFR][1000 genomes]
rs671766	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7101936	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7115321	1.00[AFR][1000 genomes]
rs7122570	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7129851	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7931372	1.00[AFR][1000 genomes]
rs7937866	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7945119	1.00[AFR][1000 genomes]
rs7947513	1.00[AFR][1000 genomes]
rs7948244	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7950432	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs919600	1.00[AFR][1000 genomes]
rs9795303	1.00[AFR][1000 genomes]
rs994305	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv983041	chr11:72548104-72549896	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72533800-72549400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:72534000-72549200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:72534200-72550000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
5	chr11:72540600-72589800	Strong transcription	Primary B cells from cord blood	blood
6	chr11:72540800-72554000	Weak transcription	Colonic Mucosa	Colon
7	chr11:72541000-72550800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:72541400-72549000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:72541600-72558400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:72541800-72548600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:72541800-72548800	Weak transcription	Fetal Brain Female	brain
12	chr11:72542000-72549400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:72542000-72553000	Weak transcription	Gastric	stomach
14	chr11:72542200-72548600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:72543000-72551600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:72543000-72556400	Weak transcription	K562	blood
17	chr11:72543200-72548800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:72543200-72549000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:72543200-72549200	Weak transcription	Pancreas	Pancrea
20	chr11:72543200-72550600	Weak transcription	Hela-S3	cervix
21	chr11:72543200-72552600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:72543200-72555600	Strong transcription	Fetal Thymus	thymus
23	chr11:72543200-72556800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:72543200-72558200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:72543200-72562200	Weak transcription	A549	lung
26	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
27	chr11:72543400-72548600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:72543400-72549200	Weak transcription	HMEC	breast
29	chr11:72543400-72560800	Strong transcription	GM12878-XiMat	blood
30	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:72543600-72548600	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:72543600-72555400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:72544200-72549400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:72544600-72550600	Weak transcription	Esophagus	oesophagus
35	chr11:72545200-72561000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:72545600-72554000	Strong transcription	Fetal Intestine Small	intestine
37	chr11:72546000-72549200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:72546000-72554400	Strong transcription	Brain Germinal Matrix	brain
39	chr11:72546000-72555600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:72546000-72555800	Strong transcription	Thymus	Thymus
41	chr11:72546000-72557000	Strong transcription	Primary T cells from cord blood	blood
42	chr11:72546000-72557200	Strong transcription	HepG2	liver
43	chr11:72546000-72557600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:72546000-72558000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:72546000-72558600	Strong transcription	Liver	Liver
46	chr11:72546200-72548600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:72546200-72549200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:72546200-72549600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:72546200-72553600	Strong transcription	Fetal Intestine Large	intestine
50	chr11:72546400-72548600	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links