The 2.0 version of rSNPBase

Variant report

Variant rs10754421
Chromosome Location chr1:120324615-120324616
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:120311800-120324800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:120311800-120325400 Weak transcription Lung lung
3 chr1:120314600-120324800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr1:120316800-120326000 Weak transcription Esophagus oesophagus
5 chr1:120317000-120325400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:120318400-120325200 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:120318400-120328000 Weak transcription Gastric stomach
8 chr1:120321600-120330800 Enhancers Placenta Placenta
9 chr1:120322800-120325200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:120322800-120325600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:120322800-120326400 Weak transcription Colonic Mucosa Colon
12 chr1:120323000-120324800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:120323000-120324800 Weak transcription Fetal Intestine Large intestine
14 chr1:120323000-120325000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:120323000-120325200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr1:120323000-120325600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr1:120323000-120326600 Weak transcription Stomach Smooth Muscle stomach
18 chr1:120323200-120324800 Weak transcription Fetal Stomach stomach
19 chr1:120323200-120325600 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr1:120323400-120324800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr1:120323400-120324800 Weak transcription Fetal Muscle Leg muscle
22 chr1:120323400-120325200 Weak transcription NHEK skin
23 chr1:120323400-120325400 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:120323400-120325600 Weak transcription Ovary ovary
25 chr1:120323400-120325600 Weak transcription Hela-S3 cervix
26 chr1:120323400-120325800 Weak transcription Adipose Nuclei Adipose
27 chr1:120323400-120326000 Weak transcription Pancreas Pancrea
28 chr1:120323400-120326400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:120323400-120326800 Weak transcription Colon Smooth Muscle Colon
30 chr1:120323600-120325400 Weak transcription Duodenum Mucosa Duodenum
31 chr1:120323600-120329400 Enhancers Liver Liver
32 chr1:120323800-120324800 Weak transcription Fetal Intestine Small intestine
33 chr1:120323800-120325000 Weak transcription Fetal Lung lung
34 chr1:120323800-120325200 Weak transcription Fetal Kidney kidney
35 chr1:120323800-120332600 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr1:120324400-120325400 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr1:120324600-120325000 Weak transcription Stomach Mucosa stomach
38 chr1:120324600-120328800 Enhancers HepG2 liver

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Last update: Aug 31, 2015