Variant report

Variant rs17258467
Chromosome Location chr1:120323058-120323059
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:120311800-120324800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:120311800-120325400 Weak transcription Lung lung
3 chr1:120314600-120324800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr1:120316800-120326000 Weak transcription Esophagus oesophagus
5 chr1:120317000-120325400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:120318400-120325200 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:120318400-120328000 Weak transcription Gastric stomach
8 chr1:120321600-120323800 Enhancers Fetal Intestine Small intestine
9 chr1:120321600-120330800 Enhancers Placenta Placenta
10 chr1:120321800-120323200 Enhancers Fetal Stomach stomach
11 chr1:120321800-120323200 Flanking Active TSS HepG2 liver
12 chr1:120322000-120323600 Flanking Active TSS Liver Liver
13 chr1:120322000-120323800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
14 chr1:120322200-120323200 Active TSS Rectal Mucosa Donor 29 rectum
15 chr1:120322400-120323200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:120322400-120323400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:120322600-120323200 Flanking Active TSS Rectal Smooth Muscle rectum
18 chr1:120322600-120323400 Flanking Active TSS Fetal Kidney kidney
19 chr1:120322600-120323400 Flanking Active TSS Fetal Lung lung
20 chr1:120322600-120323400 Enhancers Pancreas Pancrea
21 chr1:120322600-120323800 Enhancers HSMM muscle
22 chr1:120322800-120323200 Active TSS Duodenum Mucosa Duodenum
23 chr1:120322800-120323200 Active TSS Ovary ovary
24 chr1:120322800-120325200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:120322800-120325600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:120322800-120326400 Weak transcription Colonic Mucosa Colon
27 chr1:120323000-120323200 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
28 chr1:120323000-120323200 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr1:120323000-120323400 Enhancers Adipose Nuclei Adipose
30 chr1:120323000-120323400 Enhancers Colon Smooth Muscle Colon
31 chr1:120323000-120323400 Enhancers Duodenum Smooth Muscle Duodenum
32 chr1:120323000-120323400 Enhancers Fetal Muscle Leg muscle
33 chr1:120323000-120323400 Enhancers Hela-S3 cervix
34 chr1:120323000-120323400 Enhancers NHDF-Ad bronchial
35 chr1:120323000-120323400 Enhancers NHEK skin
36 chr1:120323000-120323800 Enhancers Small Intestine intestine
37 chr1:120323000-120324600 Enhancers Stomach Mucosa stomach
38 chr1:120323000-120324800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr1:120323000-120324800 Weak transcription Fetal Intestine Large intestine
40 chr1:120323000-120325000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr1:120323000-120325200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:120323000-120325600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr1:120323000-120326600 Weak transcription Stomach Smooth Muscle stomach

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