The 2.0 version of rSNPBase

Variant report

Variant rs729234
Chromosome Location chr1:120337835-120337836
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:120332800-120341600 Enhancers Fetal Stomach stomach
2 chr1:120333800-120339200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr1:120334000-120338400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:120334000-120339400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr1:120334200-120338000 Weak transcription Small Intestine intestine
6 chr1:120335800-120338800 Enhancers Duodenum Smooth Muscle Duodenum
7 chr1:120336000-120338600 Enhancers Fetal Muscle Leg muscle
8 chr1:120336000-120338800 Enhancers Fetal Intestine Large intestine
9 chr1:120336000-120338800 Enhancers Stomach Mucosa stomach
10 chr1:120336000-120340200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:120336000-120341600 Weak transcription Primary T cells from cord blood blood
12 chr1:120336000-120349400 Weak transcription Right Atrium heart
13 chr1:120336200-120338800 Enhancers Breast Myoepithelial Primary Cells Breast
14 chr1:120336200-120339600 Enhancers Colon Smooth Muscle Colon
15 chr1:120336400-120338000 Flanking Active TSS Stomach Smooth Muscle stomach
16 chr1:120336400-120338400 Enhancers Gastric stomach
17 chr1:120336400-120342200 Weak transcription Spleen Spleen
18 chr1:120336600-120338000 Weak transcription Esophagus oesophagus
19 chr1:120336600-120338000 Enhancers HepG2 liver
20 chr1:120336600-120338200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:120336800-120338200 Enhancers Osteobl bone
22 chr1:120337000-120338000 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr1:120337000-120338200 Weak transcription Fetal Muscle Trunk muscle
24 chr1:120337000-120338400 Enhancers Liver Liver
25 chr1:120337000-120338600 Enhancers Colonic Mucosa Colon
26 chr1:120337000-120338800 Enhancers Duodenum Mucosa Duodenum
27 chr1:120337000-120340000 Enhancers Fetal Lung lung
28 chr1:120337200-120338000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:120337200-120339600 Enhancers Rectal Smooth Muscle rectum
30 chr1:120337200-120340000 Enhancers Fetal Intestine Small intestine
31 chr1:120337400-120338000 Enhancers Fetal Kidney kidney
32 chr1:120337800-120338400 Enhancers Rectal Mucosa Donor 31 rectum
33 chr1:120337800-120338800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:120337800-120338800 Genic enhancers Pancreas Pancrea
35 chr1:120337800-120338800 Enhancers Rectal Mucosa Donor 29 rectum
36 chr1:120337800-120338800 Enhancers HMEC breast
37 chr1:120337800-120339600 Enhancers Placenta Placenta

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Last update: Aug 31, 2015