The 2.0 version of rSNPBase

Variant report

Variant rs12567027
Chromosome Location chr1:120332678-120332679
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:32 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:120324800-120335000 Enhancers Fetal Intestine Large intestine
2 chr1:120324800-120335000 Enhancers Fetal Intestine Small intestine
3 chr1:120325600-120333600 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr1:120327200-120336400 Weak transcription Rectal Smooth Muscle rectum
5 chr1:120327400-120337000 Weak transcription Colonic Mucosa Colon
6 chr1:120328400-120336800 Weak transcription Fetal Muscle Trunk muscle
7 chr1:120328600-120333200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr1:120328800-120333200 Weak transcription Stomach Smooth Muscle stomach
9 chr1:120328800-120333600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr1:120329000-120332800 Weak transcription Fetal Stomach stomach
11 chr1:120329600-120333600 Weak transcription Gastric stomach
12 chr1:120330000-120334400 Enhancers Duodenum Mucosa Duodenum
13 chr1:120330200-120332800 Weak transcription Small Intestine intestine
14 chr1:120330200-120333600 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:120330200-120336000 Weak transcription Esophagus oesophagus
16 chr1:120330600-120333200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr1:120330600-120333600 Weak transcription Pancreas Pancrea
18 chr1:120330600-120336000 Weak transcription Fetal Muscle Leg muscle
19 chr1:120330800-120332800 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr1:120330800-120333200 Weak transcription Placenta Placenta
21 chr1:120330800-120335800 Weak transcription Fetal Lung lung
22 chr1:120331000-120332800 Weak transcription Stomach Mucosa stomach
23 chr1:120331000-120335800 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:120331000-120337800 Weak transcription HMEC breast
25 chr1:120331200-120332800 Weak transcription HepG2 liver
26 chr1:120331200-120333000 Weak transcription Fetal Kidney kidney
27 chr1:120331200-120333200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:120331200-120336200 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr1:120331600-120333800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:120332600-120332800 Enhancers Liver Liver
31 chr1:120332600-120333000 Enhancers Rectal Mucosa Donor 29 rectum
32 chr1:120332600-120334600 Enhancers Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015